PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA3918
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family ERF
Protein Properties Length: 174aa    MW: 20089.3 Da    PI: 9.5374
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA3918genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.95.1e-183988255
                       AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                               y+G+r +k +g+WvAeIr+p   +kr r++lg++ t+  Aa+a++ a  +l+g
  Tp57577_TGAC_v2_mRNA3918 39 PYRGIRMRK-WGKWVAEIREP---NKRSRIWLGSYITPIAAARAYDTAVFYLRG 88
                              69*****99.**********9...336*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003804.8E-3539102IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-203997IPR016177DNA-binding domain
PROSITE profilePS5103221.7733996IPR001471AP2/ERF domain
CDDcd000181.30E-264098No hitNo description
PRINTSPR003671.4E-114051IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.8E-294097IPR001471AP2/ERF domain
PfamPF008471.8E-104088IPR001471AP2/ERF domain
PRINTSPR003671.4E-117898IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 174 aa     Download sequence    Send to blast
MKEDREYYCS MNSRTNNNIS IDNNNNNKEM RKEKKAMKPY RGIRMRKWGK WVAEIREPNK  60
RSRIWLGSYI TPIAAARAYD TAVFYLRGPS AHLNFPELLF KDQEHEENQQ QRGNMSADTI  120
RKKATQVGAR VDALEIHASS NNHHVHDDSN SSSSTTTNSL KPDLNEFPNP EDY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A8e-153896463ATERF1
3gcc_A8e-153896463ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA3918
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1378241e-129AC137824.25 Medicago truncatula clone mth2-10l10, complete sequence.
GenBankAC1484861e-129AC148486.17 Medicago truncatula clone mth2-56d23, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003589156.22e-78ethylene-responsive transcription factor RAP2-1
SwissprotO221742e-49ERF08_ARATH; Ethylene-responsive transcription factor ERF008
SwissprotQ8LC301e-49RAP21_ARATH; Ethylene-responsive transcription factor RAP2-1
TrEMBLA0A2K3MW932e-99A0A2K3MW93_TRIPR; Ethylene-responsive transcription factor rap2-1-like protein
STRINGAES594074e-77(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF129032106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46768.16e-47related to AP2 1
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Sazegari S,Niazi A,Ahmadi FS
    A study on the regulatory network with promoter analysis for Arabidopsis DREB-genes.
    Bioinformation, 2015. 11(2): p. 101-6
    [PMID:25848171]