PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA39192
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family C2H2
Protein Properties Length: 431aa    MW: 48754.2 Da    PI: 9.7079
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA39192genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.54.9e-056082123
                               EEETTTTEEESSHHHHHHHHHHT CS
                    zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                               y+C+ C+k+Fs++  L  H++ H
  Tp57577_TGAC_v2_mRNA39192 60 YPCKFCNKMFSSPQGLGGHQNAH 82
                               99*****************9988 PP
2zf-C2H216.42.6e-05307329123
                                EEETTTTEEESSHHHHHHHHHHT CS
                    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                y+C+ C+k+Fs++  L  H++ H
  Tp57577_TGAC_v2_mRNA39192 307 YPCKFCNKMFSNPQALGGHQNAH 329
                                99******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.602.3E-65186IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.54E-65787No hitNo description
PROSITE profilePS5015711.2816087IPR007087Zinc finger, C2H2
SMARTSM003550.0796082IPR015880Zinc finger, C2H2-like
PfamPF139122.4E-46084IPR007087Zinc finger, C2H2
PROSITE patternPS0002806282IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.608.3E-7298333IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.12E-6304334No hitNo description
SMARTSM003550.036307329IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.406307334IPR007087Zinc finger, C2H2
PfamPF138940.0011307329No hitNo description
PROSITE patternPS000280309329IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 431 aa     Download sequence    Send to blast
MSETLHFGDG VTGENRKQKR KMEERLAADS HLSLSLSIGG GRGRGSSSKS LKIHDEQRKY  60
PCKFCNKMFS SPQGLGGHQN AHRRERVLSR MDREIQMGTF GLGPHLCPCS NRHYHHQYPL  120
TTAGSTPFYH GIRWPHLVAP TSYGNPFGMI NNSAWATQTQ LNNNQLEDDE EEKFRFNIFQ  180
KALNPPIPKK ERGLYFPGLA DRSSEELDGL DAYVFESDIV KLMYGLDAKM LYGFTQSEKS  240
CKTIKLIMSE TLHFGDGVTG ENRKQKRKME ERLGVDSHLS LSLSIRAERG GESSSKSLKI  300
HEEQRKYPCK FCNKMFSNPQ ALGGHQNAHR RERVLLRMDR EIQMGTFGLG PHLCPCSNPR  360
YHHQYPLTAA GWTPFYYGIR WPHLVAPTSY GNPFGMINNS AWAIQTALNN NQLQVPSFGA  420
AQPSKYTLRT *
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA39192
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013464277.12e-58zinc finger protein 3
TrEMBLA0A2K3P8A51e-125A0A2K3P8A5_TRIPR; Zinc finger protein
STRINGXP_004514908.12e-42(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF142291217
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G01860.11e-09C2H2 family protein