PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA39255
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family MIKC_MADS
Protein Properties Length: 195aa    MW: 22410.7 Da    PI: 8.2175
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA39255genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF84.27.7e-272070151
                               S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                     SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                               krie +snrqvtfskR+ngilKKA+E+S+LCd +v++i+ +++gk++ey+s
  Tp57577_TGAC_v2_mRNA39255 20 KRIEKSSNRQVTFSKRKNGILKKAKEISILCDSQVSLILSGESGKIHEYIS 70
                               79***********************************************86 PP
2K-box71.13.4e-2482177196
                      K-box   1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkke 84 
                                yq+ sgk l++a++esl++e++++kke+e+++ ++Rhl+Ge+++sL++keL+ Le++Le++l+ + +kK+e++++  ++    e
  Tp57577_TGAC_v2_mRNA39255  82 YQRDSGKTLWDAEHESLSNEIDRIKKENESMEIQLRHLKGENITSLKFKELMDLESALENGLTCVGDKKMEVYRMLKRNGEILE 165
                                78889999****************************************************************998777777777 PP

                      K-box  85 kelqeenkaLrk 96 
                                ++++e    L++
  Tp57577_TGAC_v2_mRNA39255 166 EQNKELDLLLQQ 177
                                777776666655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006630.1791272IPR002100Transcription factor, MADS-box
SMARTSM004323.4E-341271IPR002100Transcription factor, MADS-box
CDDcd002652.81E-351391No hitNo description
SuperFamilySSF554552.35E-3213107IPR002100Transcription factor, MADS-box
PRINTSPR004041.8E-251434IPR002100Transcription factor, MADS-box
PROSITE patternPS0035001468IPR002100Transcription factor, MADS-box
PfamPF003195.1E-212168IPR002100Transcription factor, MADS-box
PRINTSPR004041.8E-253449IPR002100Transcription factor, MADS-box
PRINTSPR004041.8E-254970IPR002100Transcription factor, MADS-box
PfamPF014868.3E-1893172IPR002487Transcription factor, K-box
PROSITE profilePS5129713.63395181IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 195 aa     Download sequence    Send to blast
MQSQKQEKKK KMGRGKIEIK RIEKSSNRQV TFSKRKNGIL KKAKEISILC DSQVSLILSG  60
ESGKIHEYIS PSTTLIDVLD RYQRDSGKTL WDAEHESLSN EIDRIKKENE SMEIQLRHLK  120
GENITSLKFK ELMDLESALE NGLTCVGDKK MEVYRMLKRN GEILEEQNKE LDLLLQQHMA  180
VEDVGNMHDA SDYK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6bz1_A2e-1712102183MEF2 CHIMERA
6bz1_B2e-1712102183MEF2 CHIMERA
6bz1_C2e-1712102183MEF2 CHIMERA
6bz1_D2e-1712102183MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may play role in specifying stamen and petal organ identity. {ECO:0000269|PubMed:23181568, ECO:0000269|Ref.1, ECO:0000305|PubMed:17920788}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA39255
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013461314.21e-103floral homeotic protein PMADS 2
SwissprotQ0HA258e-81MADS9_VITVI; Agamous-like MADS-box protein MADS9
TrEMBLA0A2K3LLL81e-129A0A2K3LLL8_TRIPR; PISTILLATA protein
STRINGGLYMA06G12380.11e-101(Glycine max)
STRINGXP_007137476.11e-101(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF43553255
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G20240.15e-57MIKC_MADS family protein
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]