PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA39292
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family ERF
Protein Properties Length: 177aa    MW: 19957.3 Da    PI: 6.2361
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA39292genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP249.88.6e-161866254
                        AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkle 54
                               + kGVr++k +g+Wv+eIr+p   g +  r +lg++ t e Aa a++ a  +l+
  Tp57577_TGAC_v2_mRNA39292 18 KLKGVRRRK-WGKWVSEIRVP---G-TqERLWLGTYATREAAAVAHDVAVYCLK 66
                               78****998.**********8...3.35*********************99986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.01E-151778No hitNo description
SuperFamilySSF541712.22E-161877IPR016177DNA-binding domain
PfamPF008472.5E-91865IPR001471AP2/ERF domain
PROSITE profilePS5103220.7321877IPR001471AP2/ERF domain
SMARTSM003802.9E-231883IPR001471AP2/ERF domain
PRINTSPR003671.8E-71930IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.4E-241978IPR001471AP2/ERF domain
PRINTSPR003671.8E-74157IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 177 aa     Download sequence    Send to blast
MNWIGSSSSS TSHGNDKKLK GVRRRKWGKW VSEIRVPGTQ ERLWLGTYAT REAAAVAHDV  60
AVYCLKRPST LDKLNFPEIL SSYCIQQRDH LMSPRSVQKV ASDIAMDVDA RNIARETTMI  120
NQSTHHMNEN QQVHNVVADD VFWWEGLVDG DDLSLQGVTQ VSSQQEDLNI SIEDYL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11925KGVRRRK
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00158DAPTransfer from AT1G22810Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA39292
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU4695523e-94CU469552.2 Medicago truncatula chromosome 5 clone mth2-190a9, COMPLETE SEQUENCE.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003610945.19e-83ethylene-responsive transcription factor ERF020
SwissprotQ9C9I84e-37ERF20_ARATH; Ethylene-responsive transcription factor ERF020
TrEMBLA0A2K3M3A01e-128A0A2K3M3A0_TRIPR; Ethylene-responsive transcription factor erf020-like protein
STRINGAES939034e-82(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF54893054
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22810.12e-39ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]