PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp57577_TGAC_v2_mRNA39444

Organism

Trifolium pratense

Taxonomic ID

57577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium

Family

WOX

Protein Properties

Length: 224aa MW: 25320.4 Da PI: 6.3076

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp57577_TGAC_v2_mRNA39444	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	67.6	1.6e-21	88	148	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+t+t+ ql++Le+ F + n +ps++++++++++l +++e++V++WFqNrRa+ k+ Tp57577_TGAC_v2_mRNA39444 88 RQRWTPTPIQLQILERIFDEgNGTPSKQKIKDITNELgqhgQISETNVYNWFQNRRARSKR 148 89***************99************************************97 PP
2	Wus_type_Homeobox	100.2	1.5e-32	87	150	2	65
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 +r+RWtPtp Q++iLe+++++G tP+k++i++it+eL ++G+i+++NV++WFQNr+aR+++kq Tp57577_TGAC_v2_mRNA39444 87 SRQRWTPTPIQLQILERIFDEGNGTPSKQKIKDITNELGQHGQISETNVYNWFQNRRARSKRKQ 150 789***********************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.3E-17	84	150	IPR009057	Homeodomain-like
PROSITE profile	PS50071	15.046	84	149	IPR001356	Homeobox domain
SMART	SM00389	2.6E-15	86	153	IPR001356	Homeobox domain
SuperFamily	SSF46689	1.75E-18	87	150	IPR009057	Homeodomain-like
CDD	cd00086	3.37E-14	88	150	No hit	No description
Pfam	PF00046	2.4E-19	88	148	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 224 aa Download sequence Send to blast
METENHNSSK SNGIIIGGGG GSNLYVKVMT DEQLELLRQQ ISVYTTISDQ LVQMHKSITT 60 QHDLAGLRLG NLYCDPLMAC SGHKITSRQR WTPTPIQLQI LERIFDEGNG TPSKQKIKDI 120 TNELGQHGQI SETNVYNWFQ NRRARSKRKQ LVPTTNQSEP EPETEVESPK ENKTHEECDR 180 VQFLENLSPH SIKDMYIQSP DIAGFEHLLS KIEVSGSYSS YFL*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	141	149	RRARSKRKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor which may be involved in developmental processes. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00617	PBM	Transfer from AT4G35550	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp57577_TGAC_v2_mRNA39444

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013462298.1	1e-126	WUSCHEL-related homeobox 8
Swissprot	Q5QMM3	1e-72	WOX8_ORYSJ; WUSCHEL-related homeobox 8
TrEMBL	A0A2K3LVQ0	1e-149	A0A2K3LVQ0_TRIPR; WUSCHEL-related homeobox 13-like protein
STRING	XP_004500856.1	1e-125	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1855	34	93

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35550.1	7e-70	WUSCHEL related homeobox 13

Link Out ? help Back to Top
Phytozome	Tp57577_TGAC_v2_mRNA39444

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]