PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA39573
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family bZIP
Protein Properties Length: 182aa    MW: 20205.4 Da    PI: 6.2669
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA39573genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_136.69.7e-1297134339
                                XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHH.HHHHHH CS
                     bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLee.kvkeLe 39 
                                + k  rr+++NReAAr+sR+RKka++++Le  +vk ++
  Tp57577_TGAC_v2_mRNA39573  97 DHKTLRRLAQNREAARKSRLRKKAYVQQLESsRVKLMQ 134
                                67899************************972444333 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003383.1E-695158IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.15197141IPR004827Basic-leucine zipper domain
PfamPF001703.8E-898134IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.83E-799142No hitNo description
Gene3DG3DSA:1.20.5.1703.1E-8100143No hitNo description
PROSITE patternPS000360102117IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 182 aa     Download sequence    Send to blast
MLMWQLRVDN IGSAEIASNG AGCSDAGQQQ LMYNKGIASL PLGVENWADS GMADNSQQTD  60
DTSTDIDTDD KNQSNRGKSE AHMVANSRDQ TKFRAEDHKT LRRLAQNREA ARKSRLRKKA  120
YVQQLESSRV KLMQLEQELQ RARQQGLYLA NPGDQGHSTV GNGNENAISC DFCFSVEFLF  180
M*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. Binds to the hexamer motif 5'-ACGTCA-3' of histone gene promoters.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA39573
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006574877.12e-68transcription factor TGA2.2 isoform X1
RefseqXP_028201497.12e-68transcription factor TGA2.2-like isoform X1
SwissprotQ415585e-37HBP1C_WHEAT; Transcription factor HBP-1b(c1) (Fragment)
TrEMBLA0A0B2R0A34e-67A0A0B2R0A3_GLYSO; Transcription factor HBP-1b(C1)
TrEMBLK7K7E44e-67K7K7E4_SOYBN; Uncharacterized protein
STRINGGLYMA02G10833.17e-68(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1588759
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12250.33e-23TGACG motif-binding factor 6