PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA39592
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family C2H2
Protein Properties Length: 254aa    MW: 28849.7 Da    PI: 8.3813
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA39592genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.10.001293115223
                                EETTTTEEESSHHHHHHHHHH.T CS
                    zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                                +C+ C ++++++ +L  H +  H
  Tp57577_TGAC_v2_mRNA39592  93 SCSVCFRVYPTSRLLSIHVSEaH 115
                                6*****************99877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.736590IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002806790IPR007087Zinc finger, C2H2
SMARTSM003551192115IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028094115IPR007087Zinc finger, C2H2
SMARTSM003550.2130155IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280132155IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MDVENQNPDS EFPFWKPIPR RFQPDSPFFA IGNLERELLV KQVALELTEE KEQLEDLIQE  60
DVREVFCPIV GCGARLASME DFENHYNARH TASCSVCFRV YPTSRLLSIH VSEAHDSFFQ  120
AKVARGYDMY ECLVEGCGLK FKSYKSRHQH LVDKHKFPTS FEFFKKALPS KKHRMKSQRK  180
KPSHSHKEDT SGMMEVENAA IDDLVSAVSK LNTSDSTPSS ISFGRRNPKG MTFVPRAVQH  240
GKGSNSDSSV TKR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA39592
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004513314.11e-162zinc finger protein 511
TrEMBLA0A2K3N2X70.0A0A2K3N2X7_TRIPR; Zinc finger protein 511-like protein
STRINGXP_004513314.11e-161(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF97182430
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14140.11e-114zinc ion binding;nucleic acid binding;zinc ion binding