PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA39620
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family HD-ZIP
Protein Properties Length: 213aa    MW: 24318.8 Da    PI: 8.9812
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA39620genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox611.8e-1964118256
                                T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                   Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                                rk+ ++tkeq + Lee F+ n++++ +++e LA++l+L  rqV vWFqNrRa+ k
  Tp57577_TGAC_v2_mRNA39620  64 RKKLRLTKEQSHLLEEKFRTNHTLNPKQKESLAMQLKLRPRQVEVWFQNRRARSK 118
                                78889************************************************98 PP
2HD-ZIP_I/II117.19.8e-3864152189
                HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekev 84 
                                +kk+rl+keq++lLEe+F+++++L+p++K++la +L+l+prqv+vWFqnrRAR k+kq+E+++e+Lkr++ +l+e+n+rL++ev
  Tp57577_TGAC_v2_mRNA39620  64 RKKLRLTKEQSHLLEEKFRTNHTLNPKQKESLAMQLKLRPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGTLTEQNRRLQREV 147
                                69********************************************************************************** PP

                HD-ZIP_I/II  85 eeLre 89 
                                eeLr+
  Tp57577_TGAC_v2_mRNA39620 148 EELRA 152
                                ***94 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.38E-1855121IPR009057Homeodomain-like
PROSITE profilePS5007117.45960120IPR001356Homeobox domain
SMARTSM003891.8E-1762124IPR001356Homeobox domain
CDDcd000865.01E-1663121No hitNo description
Gene3DG3DSA:1.10.10.601.1E-1764118IPR009057Homeodomain-like
PfamPF000461.0E-1664118IPR001356Homeobox domain
PROSITE patternPS00027095118IPR017970Homeobox, conserved site
PfamPF021831.3E-9120154IPR003106Leucine zipper, homeobox-associated
SMARTSM003408.2E-22120163IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    Send to blast
MAVLPTNPSS LELTISIPGF ASSPTTFLPS STVKKLDMNR VAIEEEWMEV EDEEENSLNG  60
DTPRKKLRLT KEQSHLLEEK FRTNHTLNPK QKESLAMQLK LRPRQVEVWF QNRRARSKLK  120
QTEMECEYLK RWFGTLTEQN RRLQREVEEL RAMKVGPPTV LSPHSCDPLP ASTLSMCPRC  180
ERVTTNTADK FLTDAVTLSP KVSTPALHSR QS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1112120RRARSKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription repressor that binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. {ECO:0000269|PubMed:10732669}.
UniProtProbable transcription repressor that binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. {ECO:0000269|PubMed:10732669}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA39620
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1416170.0BT141617.1 Medicago truncatula clone JCVI-FLMt-6H7 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027347874.11e-116homeobox-leucine zipper protein HOX3-like
SwissprotQ0JKX11e-78HOX3_ORYSJ; Homeobox-leucine zipper protein HOX3
SwissprotQ9XH381e-78HOX3_ORYSI; Homeobox-leucine zipper protein HOX3
TrEMBLA0A445EZH01e-110A0A445EZH0_GLYSO; Homeobox-leucine zipper protein ATHB-17
TrEMBLA0A4P1RFV31e-110A0A4P1RFV3_LUPAN; Uncharacterized protein
STRINGGLYMA20G01770.11e-110(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF95063040
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01430.15e-75homeobox-leucine zipper protein 17