PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA39716
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family B3
Protein Properties Length: 670aa    MW: 77262.9 Da    PI: 9.8277
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA39716genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B333.11e-10193281193
                                EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EE CS
                         B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfv 80 
                                ff v +p+++ + + +++p +f  eh         +    tl   +   +ev++++++k ++ ++++GWk F +  +L++ D++
  Tp57577_TGAC_v2_mRNA39716 193 FFEVIMPKSYVNGDFFRIPTEFSIEHlnnfY----G--IATLFVGEEMAMEVNMRFNNKNKASFIGTGWKLFSEKYNLQVDDVC 270
                                788899999999999***********54331....2..3555566777888888889999999********************* PP

                                EEEE-SSSEE..E CS
                         B3  81 vFkldgrsefelv 93 
                                 F +++r+    +
  Tp57577_TGAC_v2_mRNA39716 271 KFVMTQREPL--F 281
                                **98776444..4 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010190.0029996IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.0E-11996IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.86E-1318103IPR015300DNA-binding pseudobarrel domain
CDDcd100172.06E-91994No hitNo description
Gene3DG3DSA:2.40.330.103.7E-13187278IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.89E-15188288IPR015300DNA-binding pseudobarrel domain
CDDcd100171.55E-9192288No hitNo description
SMARTSM010190.0032193288IPR003340B3 DNA binding domain
PROSITE profilePS508639.023193290IPR003340B3 DNA binding domain
PfamPF023626.0E-8193284IPR003340B3 DNA binding domain
SMARTSM010190.011341428IPR003340B3 DNA binding domain
CDDcd100171.91E-9342426No hitNo description
Gene3DG3DSA:2.40.330.102.1E-10349428IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.71E-12351435IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.5E-12517604IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.81E-13518609IPR015300DNA-binding pseudobarrel domain
CDDcd100172.42E-8522612No hitNo description
PROSITE profilePS508638.557523614IPR003340B3 DNA binding domain
SMARTSM010190.0085524614IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 670 aa     Download sequence    Send to blast
MSFQYYPQFH RIILQDKNLK IPKKYVEKFW KGISNPIFLR FPNGVQQEIF WVKKSNSEIW  60
FQKNWDQFAK SLKYGNLLTF KYIGESCFKV KIFCANALEI NYSNIKSIVD EEQVVEAAEK  120
EAKEIVEVSD ESEIYMQAQR IGNCKRKFNT PIDLDSTQKN LSGRNREGKV KKAKKGSTTS  180
AVINMRDNNQ NPFFEVIMPK SYVNGDFFRI PTEFSIEHLN NFYGIATLFV GEEMAMEVNM  240
RFNNKNKASF IGTGWKLFSE KYNLQVDDVC KFVMTQREPL FFTIIINRAT NRLNPEKFLG  300
YKEGISCDNN AAKRKDTGGS SSSCPKVHFF YGDRDVMKSN TFKVLVNGKI PRIPKKYVEK  360
FWKGISNPIF LRFPNGIQQE IFWVKKSNGE IWFQKNWDQF AKSLKYGNLL TFKYIGGSCF  420
KVKIFCASAL EINYSNIKSI VDEEQVVEAA EKEAKEIVEV SDESEIYMQA QKTGNGKRKI  480
NMDLDSTQQK LSGSNRGGMV KKTKKCSTTA AAITMRDNNQ NPFFDVIMTK TYADGKFLRI  540
PKKFSREHLN NFEGIATLFV GEEMAMEVNI RSSIIGVGWK LFSEKYNLQV DDSCKFVMTQ  600
REPLLFNIII NRARKGPNPK CYKEEISCDN NVVRKDIGES SRSRPEVHSF YGILLTSLKF  660
FAFIIVKDS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA39716
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024630384.11e-113B3 domain-containing transcription factor VRN1-like
TrEMBLA0A072VHA41e-129A0A072VHA4_MEDTR; B3 DNA-binding domain protein
TrEMBLA0A396JJ071e-129A0A396JJ07_MEDTR; Putative transcription factor B3-Domain family
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF11472624
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.14e-14B3 family protein