PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA39724
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family MYB
Protein Properties Length: 233aa    MW: 26295.4 Da    PI: 8.4593
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA39724genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding32.61.8e-101321547
                               HHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
            Myb_DNA-binding 15 avkqlGggtWktIartmgkgRtlkqcksrwqky 47
                               +v+++G ++W+ I++ ++ gR++k+c++rw + 
  Tp57577_TGAC_v2_mRNA39724  1 LVNEYGARNWSVISNGIP-GRSGKSCRLRWCNQ 32
                               69****************.***********985 PP
2Myb_DNA-binding54.62.4e-174183347
                               SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
            Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                               ++T+ Ed ++++a++ +G++ W+tI+r ++ gRt++ +k++w++ 
  Tp57577_TGAC_v2_mRNA39724 41 PFTPAEDNIIIQAHAVHGNK-WATISRLLP-GRTDNAIKNHWNST 83
                               89******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.608.4E-17140IPR009057Homeodomain-like
PfamPF002499.7E-10132IPR001005SANT/Myb domain
PROSITE profilePS5129413.515133IPR017930Myb domain
CDDcd001677.17E-9131No hitNo description
SMARTSM007171.6135IPR001005SANT/Myb domain
SuperFamilySSF466891.03E-251387IPR009057Homeodomain-like
PROSITE profilePS5129425.6763488IPR017930Myb domain
SMARTSM007171.1E-143886IPR001005SANT/Myb domain
CDDcd001677.88E-134184No hitNo description
PfamPF002491.1E-144183IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-234187IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    Send to blast
LVNEYGARNW SVISNGIPGR SGKSCRLRWC NQLSPDVQHR PFTPAEDNII IQAHAVHGNK  60
WATISRLLPG RTDNAIKNHW NSTLRRRRTE AATVTPIMPV VSSTVNIGKR GSNMYDGYNN  120
GLLDLGYGYK RQCVENNNNN NXXXXXXXXE EEDAGNGVTV MTSLSLFPPG EKLIKEEKEK  180
KEKERDFDFD DNLKLLGNDN LRSIIQRMIA EEVRNYVDNL DGFQLGTPDS RK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A5e-3218718104MYB PROTO-ONCOGENE PROTEIN
1mse_C5e-3218718104C-Myb DNA-Binding Domain
1msf_C5e-3218718104C-Myb DNA-Binding Domain
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA39724
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1447291e-75AC144729.29 Medicago truncatula clone mth2-15j6, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004491024.14e-97transcription factor MYB44-like
TrEMBLA0A2K3NG581e-142A0A2K3NG58_TRIPR; Transcription factor MYB 44-like protein
STRINGXP_004491024.11e-96(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF116002935
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50060.17e-46myb domain protein 77