PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp57577_TGAC_v2_mRNA39767

Organism

Trifolium pratense

Taxonomic ID

57577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium

Family

MYB

Protein Properties

Length: 182aa MW: 20698.4 Da PI: 9.0866

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp57577_TGAC_v2_mRNA39767	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	55	1.9e-17	22	69	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEde+l+ +++ +G g+W++ ++ g+ R++k+c++rw +yl Tp57577_TGAC_v2_mRNA39767 22 KGAWSKEEDERLIAYITAHGEGCWRSLPKAAGLLRCGKSCRLRWINYL 69 79****************************99**********97 PP
2	Myb_DNA-binding	60.1	4.9e-19	75	120	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T++Ed+l+++++++lG++ W++Ia +++ gRt++++k++w+++l Tp57577_TGAC_v2_mRNA39767 75 RGNFTQQEDQLIIKLHTLLGNK-WSLIAGRLP-GRTDNEIKNYWNTHL 120 89******************.*****.**********996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	8.4E-24	13	72	IPR009057	Homeodomain-like
PROSITE profile	PS51294	15.677	17	69	IPR017930	Myb domain
SMART	SM00717	9.0E-13	21	71	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	3.07E-29	21	116	IPR009057	Homeodomain-like
Pfam	PF00249	1.1E-14	22	69	IPR001005	SANT/Myb domain
CDD	cd00167	2.03E-9	24	69	No hit	No description
PROSITE profile	PS51294	28.161	70	124	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	2.6E-28	73	124	IPR009057	Homeodomain-like
SMART	SM00717	9.0E-17	74	122	IPR001005	SANT/Myb domain
Pfam	PF00249	1.3E-16	75	120	IPR001005	SANT/Myb domain
CDD	cd00167	1.85E-11	77	120	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 182 aa Download sequence Send to blast
MEEKRSIDMG RSPCCEKGHT NKGAWSKEED ERLIAYITAH GEGCWRSLPK AAGLLRCGKS 60 CRLRWINYLR PDLKRGNFTQ QEDQLIIKLH TLLGNKWSLI AGRLPGRTDN EIKNYWNTHL 120 RKKLLSRGID PATQMPLNQT SQQEERCPDL NLELTISPPH DHPHQQQQQP FSSGTSSTVT 180 S*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1h8a_C	8e-29	21	124	26	128	MYB TRANSFORMING PROTEIN
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. {ECO:0000305}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp57577_TGAC_v2_mRNA39767

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CU024876	2e-64	CU024876.6 M.truncatula DNA sequence from clone MTH2-144H1 on chromosome 3, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027354269.1	8e-95	myb-related protein 308-like
Refseq	XP_028227237.1	4e-95	myb-related protein 308-like
Swissprot	P81393	5e-90	MYB08_ANTMA; Myb-related protein 308
TrEMBL	A0A2K3L9I7	1e-114	A0A2K3L9I7_TRIPR; MYB-related protein 308-like protein
STRING	Gorai.008G035700.1	7e-94	(Gossypium raimondii)
STRING	GLYMA04G00550.1	5e-94	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF264	34	221

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38620.1	1e-88	myb domain protein 4

Link Out ? help Back to Top
Phytozome	Tp57577_TGAC_v2_mRNA39767

Publications ? help Back to Top
Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C Expression patterns of myb genes from Antirrhinum flowers. Plant Cell, 1991. 3(2): p. 115-25 [PMID:1840903]