PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA3984
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family M-type_MADS
Protein Properties Length: 220aa    MW: 24766.4 Da    PI: 9.7674
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA3984genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF66.13.5e-211764249
                              ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
                    SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                              +i  ks  qvtfskRr g++KKA+EL++LC++e+a+++fs+ +k + +
  Tp57577_TGAC_v2_mRNA3984 17 KIPKKSHLQVTFSKRRSGLFKKASELCTLCGVEIAIVVFSPANKAFSF 64
                              57789999**********************************997766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006623.352868IPR002100Transcription factor, MADS-box
SMARTSM004321.4E-29867IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.31E-26985IPR002100Transcription factor, MADS-box
CDDcd002657.14E-33978No hitNo description
PRINTSPR004043.6E-171030IPR002100Transcription factor, MADS-box
PfamPF003191.2E-231764IPR002100Transcription factor, MADS-box
PRINTSPR004043.6E-173045IPR002100Transcription factor, MADS-box
PRINTSPR004043.6E-174566IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009960Biological Processendosperm development
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 220 aa     Download sequence    Send to blast
MSKKKSSLGR QKIPIEKIPK KSHLQVTFSK RRSGLFKKAS ELCTLCGVEI AIVVFSPANK  60
AFSFGHPEVE SIIDRYLTRN PPQESSAHQL VEAHRNANVR DLNIQLTQLL NHLEIEKKQG  120
EEIEHMRKAR QSQFWWESPI DELGLNELVQ LKGSIEELKN NIGKFASKCM MEQSNVPSPN  180
MGANGFGRYD SLDNKFGLGI NIAPPPPNSY YLGFRNGYL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A6e-18893187MEF2C
5f28_B6e-18893187MEF2C
5f28_C6e-18893187MEF2C
5f28_D6e-18893187MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Required for suppression of cellularization and promotion of nuclear proliferation during early endosperm development. The FERTILIZATION-INDEPENDENT SEED (FIS) polycomb complex is required for suppression of ALG62 expression at the end of the syncytial phase of endosperm development. {ECO:0000269|PubMed:18334668}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA3984
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004511261.11e-147agamous-like MADS-box protein AGL61
SwissprotQ9FKK23e-56AGL62_ARATH; Agamous-like MADS-box protein AGL62
TrEMBLA0A1S2YWY31e-145A0A1S2YWY3_CICAR; agamous-like MADS-box protein AGL61
STRINGXP_004511261.11e-146(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF12833331
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.11e-58AGAMOUS-like 62
Publications ? help Back to Top
  1. Xu W, et al.
    Endosperm and Nucellus Develop Antagonistically in Arabidopsis Seeds.
    Plant Cell, 2016. 28(6): p. 1343-60
    [PMID:27233529]
  2. Figueiredo DD,Batista RA,Roszak PJ,Köhler C
    Auxin production couples endosperm development to fertilization.
    Nat Plants, 2015. 1: p. 15184
    [PMID:27251719]
  3. Figueiredo DD,Batista RA,Roszak PJ,Hennig L,Köhler C
    Auxin production in the endosperm drives seed coat development in Arabidopsis.
    Elife, 2017.
    [PMID:27848912]
  4. Fiume E,Coen O,Xu W,Lepiniec L,Magnani E
    Growth of the Arabidopsis sub-epidermal integument cell layers might require an endosperm signal.
    Plant Signal Behav, 2017. 12(8): p. e1339000
    [PMID:28613109]
  5. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]