PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA39889
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family bZIP
Protein Properties Length: 143aa    MW: 16398.5 Da    PI: 5.8455
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA39889genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_141.62.7e-132482563
                               CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                     bZIP_1  5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63
                               ++ +r+ +NRe+ArrsR RK+++ie L+e++  L+ eN+  +k+++  ++ + ++++ +
  Tp57577_TGAC_v2_mRNA39889 24 RKRKRMLSNRESARRSRMRKQKQIEDLTEESGRLQIENDHVAKRIKATEEAYVEMEAAN 82
                               57899********************************************9999887765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003386.7E-132084IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.1742285IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1704.2E-102277No hitNo description
PfamPF001703.8E-112481IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.13E-102478No hitNo description
CDDcd147022.49E-152575No hitNo description
PROSITE patternPS0003602742IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 143 aa     Download sequence    Send to blast
MASSQQQRPV SSGSDGGDLQ IDERKRKRML SNRESARRSR MRKQKQIEDL TEESGRLQIE  60
NDHVAKRIKA TEEAYVEMEA ANNVIRAQTM ELAERLRFLN SVIDVAEDAN DFSVEMAMIP  120
DPLLKPWFIP HYYSASNDML LR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12344RKRKRMLSNRESARRSRMRKQK
23643RRSRMRKQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA39889
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001351795.13e-62bZIP transcription factor
TrEMBLA0A2K3LP661e-99A0A2K3LP66_TRIPR; Ocs element-binding factor 1-like protein
STRINGAES616532e-61(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF42023460
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G62420.12e-33basic region/leucine zipper motif 53