PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA40071
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family ERF
Protein Properties Length: 204aa    MW: 22729.2 Da    PI: 4.4203
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA40071genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.37.7e-181867255
                        AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                                ++G+r +k +g+Wv+eIr p++   r+r++lg+++tae+Aa+a +aa ++l+g
  Tp57577_TGAC_v2_mRNA40071 18 LFRGIRKRK-WGKWVSEIRLPNS---RQRIWLGSYDTAEKAARAFDAATLCLRG 67
                               69****999.**********933...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541716.28E-201776IPR016177DNA-binding domain
CDDcd000187.16E-291777No hitNo description
PROSITE profilePS5103221.6411875IPR001471AP2/ERF domain
SMARTSM003804.4E-321881IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.4E-291876IPR001471AP2/ERF domain
PfamPF008471.1E-101867IPR001471AP2/ERF domain
PRINTSPR003676.1E-101930IPR001471AP2/ERF domain
PRINTSPR003676.1E-104157IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 204 aa     Download sequence    Send to blast
MVKSNVEKTA AERSDSSLFR GIRKRKWGKW VSEIRLPNSR QRIWLGSYDT AEKAARAFDA  60
ATLCLRGSGA KFNFPNNPPD IPGARSMTHS EIQAAAARFA NLDIHNEKLC RPDNEIIETL  120
SSSEVTVSLP SPALSDTTVQ AESDITDNGL FRDLFSETGS GYSMFPGFDD FSGEFYVPEM  180
TNFDYEEENM DGVIVLDTFL WDF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A8e-1514761073Ethylene-responsive transcription factor ERF096
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA40071
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003595363.11e-101ethylene-responsive transcription factor ERF018
TrEMBLA0A2K3PJK61e-149A0A2K3PJK6_TRIPR; Ethylene-responsive transcription factor erf017-like protein
STRINGAES656141e-101(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14793399
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19210.13e-48ERF family protein