PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA40165
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family WRKY
Protein Properties Length: 287aa    MW: 32320.3 Da    PI: 6.9182
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA40165genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY91.66.1e-29141198258
                                --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS CS
                       WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnh 58 
                                 Dgy+WrKYGqK+ ++++ pr+Y+rC+ a +Cpvkkkv++s edp++++ tYegeHnh
  Tp57577_TGAC_v2_mRNA40165 141 MDGYQWRKYGQKVTRDNPSPRAYFRCSNApSCPVKKKVQKSLEDPTILVATYEGEHNH 198
                                6**************************999**************************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.808.1E-28131199IPR003657WRKY domain
PROSITE profilePS5081125.178135201IPR003657WRKY domain
SuperFamilySSF1182903.79E-24137200IPR003657WRKY domain
SMARTSM007741.7E-32140200IPR003657WRKY domain
PfamPF031069.4E-24142198IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
MESTCVDTSL NLNINHPSTA TYKDEIMVEE LHRLNCENKR LSETLSNMCE NYEAMQKQLN  60
QLMNQNCETQ THEESRKRKA ESEDCNNMFG TIKGINVINN ECSTTTDEES LIKRPCREIS  120
SPKAYKVLVK TEASSNSLYV MDGYQWRKYG QKVTRDNPSP RAYFRCSNAP SCPVKKKVQK  180
SLEDPTILVA TYEGEHNHGH EKAEISMISS QIEESFIGSV HVTSPKQIIQ RTSPSMKIDN  240
VPKSSIQQFL VQQMATSLTN DPNFTAALAS AISGRILDHT SNKANW*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A6e-191401981471WRKY transcription factor 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA40165
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1286601e-133AC128660.31 Medicago truncatula clone mth2-14p23, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003588828.11e-175probable WRKY transcription factor 40
TrEMBLG7I7M71e-174G7I7M7_MEDTR; Putative transcription factor WRKY family
STRINGAES590791e-175(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF97334115
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80840.14e-65WRKY DNA-binding protein 40