PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA40216
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family WRKY
Protein Properties Length: 250aa    MW: 28271 Da    PI: 7.9116
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA40216genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY87.21.5e-2795152258
                                --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS CS
                       WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnh 58 
                                +Dgy+WrKYGqK+ k++  pr+Y+rC++a +C +kkkv+++ +d ++++ tY geHnh
  Tp57577_TGAC_v2_mRNA40216  95 KDGYQWRKYGQKVTKDNASPRAYFRCSMApSCLAKKKVQKCIHDRSIIVATYDGEHNH 152
                                8***************************99**************************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.9E-2789155IPR003657WRKY domain
PROSITE profilePS5081124.78889155IPR003657WRKY domain
SuperFamilySSF1182902.88E-2491155IPR003657WRKY domain
SMARTSM007747.2E-3094154IPR003657WRKY domain
PfamPF031064.0E-2295152IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
MDEKVETLQL ELQQVREENN TLRFMLEVMS IKCTKLESQL QEIKKEEHKG TSSNQIGLIP  60
NIDSNKRARL EFPTAKKPLE VFVRTNPNDD NLTIKDGYQW RKYGQKVTKD NASPRAYFRC  120
SMAPSCLAKK KVQKCIHDRS IIVATYDGEH NHGVPHQSFK PSSSTLNFSS ISNNKLPPTL  180
NDKETINTGI CEDVMQQFGY GKHIKIEEYA SSLIKDSDFT AALAEAVVQN ITGQHKRQGL  240
NLDLNLSEE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-17941551474WRKY transcription factor 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA40216
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1286602e-99AC128660.31 Medicago truncatula clone mth2-14p23, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003588831.11e-148probable WRKY transcription factor 40
TrEMBLG7I7N01e-147G7I7N0_MEDTR; Putative transcription factor WRKY family
STRINGAES590821e-147(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF73983044
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25000.12e-40WRKY DNA-binding protein 60