PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA40237
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family ERF
Protein Properties Length: 239aa    MW: 27440.8 Da    PI: 4.2901
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA40237genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.28.5e-183281255
                        AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                                ykGVr +k +g+Wv+eIr p++   r r++lg+++t e+Aa+a +aa  +l+g
  Tp57577_TGAC_v2_mRNA40237 32 LYKGVRKRK-WGKWVSEIRLPNS---RERIWLGSYDTQEKAARAFDAALYCLRG 81
                               59****999.**********933...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.08E-293191No hitNo description
SuperFamilySSF541714.58E-203289IPR016177DNA-binding domain
PROSITE profilePS5103222.1683289IPR001471AP2/ERF domain
SMARTSM003806.8E-313295IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.2E-293290IPR001471AP2/ERF domain
PRINTSPR003672.0E-93344IPR001471AP2/ERF domain
PfamPF008475.9E-113381IPR001471AP2/ERF domain
PRINTSPR003672.0E-95571IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MINSNIPTSS INVTPNDHNI SCSNNNTSTN KLYKGVRKRK WGKWVSEIRL PNSRERIWLG  60
SYDTQEKAAR AFDAALYCLR GRHASFNFPN TPLTINVAVH HGVGLKSLSP QEIQEIAAKF  120
ANDYSPPIEL SNQEDEEEEE DQQVPIESQN DANSYSSCPL YDNESDMRRM DWTFEDMFDN  180
MNGVANSIDY SLYNGLENMQ YSSELQYSTQ SFEEHNNDDQ NECENAFSDH SFLWSWNF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-1533901573Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13339KGVRKRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA40237
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU0120563e-36CU012056.10 M.truncatula DNA sequence from clone MTH2-157G22 on chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013465860.11e-105ethylene-responsive transcription factor ERF018
TrEMBLA0A2K3LU491e-165A0A2K3LU49_TRIPR; Ethylene-responsive transcription factor erf017-like protein
STRINGXP_004498968.11e-82(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14793399
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G74930.12e-42ERF family protein