PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp57577_TGAC_v2_mRNA4026

Organism

Trifolium pratense

Taxonomic ID

57577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium

Family

WOX

Protein Properties

Length: 204aa MW: 22626.6 Da PI: 8.0596

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp57577_TGAC_v2_mRNA4026	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	52.2	1e-16	26	86	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+t+++eq+ +Le+ F++ +p +ee ++ k l ++ +++V++WFqNrR + ++ Tp57577_TGAC_v2_mRNA4026 26 RSRWTPKPEQILILESIFNSgMVNPPKEETIKIRKLLekfgNVGDANVFYWFQNRRSRSRR 86 89***************99***********************************997 PP
2	Wus_type_Homeobox	106.5	1.7e-34	25	88	2	65
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 +r+RWtP+peQi iLe++++sG+++P+kee+ +i++ Le++G+++d+NVfyWFQNr++R+r++q Tp57577_TGAC_v2_mRNA4026 25 VRSRWTPKPEQILILESIFNSGMVNPPKEETIKIRKLLEKFGNVGDANVFYWFQNRRSRSRRRQ 88 589***********************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	2.48E-14	19	93	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	9.2E-10	20	93	IPR009057	Homeodomain-like
PROSITE profile	PS50071	11.693	22	87	IPR001356	Homeobox domain
SMART	SM00389	2.8E-7	24	91	IPR001356	Homeobox domain
Pfam	PF00046	2.0E-14	26	86	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 204 aa Download sequence Send to blast
MEDKMQHNPP NNTPTQHGSE KTEPVRSRWT PKPEQILILE SIFNSGMVNP PKEETIKIRK 60 LLEKFGNVGD ANVFYWFQNR RSRSRRRQRQ MQQATLDQQK NQMLMMQQPQ QVVVNDGASA 120 MNNSCDMVQT NYPIMGGFGG GSSCLNDTSG SSSGSSSSCG GVVSGQQGMD GFFSVSSQMG 180 FLGIDQTLNP SSXXXXXXXF ELSL

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp57577_TGAC_v2_mRNA4026

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003624740.1	5e-85	WUSCHEL-related homeobox 11
TrEMBL	A0A2K3LVA4	1e-99	A0A2K3LVA4_TRIPR; WUSCHEL-related homeobox 11-like protein (Fragment)
STRING	AES80958	2e-84	(Medicago truncatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5898	31	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G03660.1	5e-34	WUSCHEL related homeobox 11

Link Out ? help Back to Top
Phytozome	Tp57577_TGAC_v2_mRNA4026