PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA40282
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family NAC
Protein Properties Length: 397aa    MW: 44406.6 Da    PI: 9.4908
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA40282genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM172.41.4e-53571841128
                        NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWk 84 
                                lppGfrFhPtdeelvv+yLkkk+++ +l++  +i+evd+yk++Pw+Lp+k++ +e+ewyfFs+rd+ky++g r+nra++sgyWk
  Tp57577_TGAC_v2_mRNA40282  57 LPPGFRFHPTDEELVVHYLKKKAASAPLPV-AIIAEVDLYKFDPWELPAKATFGEQEWYFFSPRDRKYPNGARPNRAATSGYWK 139
                                79****************************.88***************988899****************************** PP

                        NAM  85 atgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                                atg+dk+vl++ ++++vg+kk Lvfy g+ p+g kt+W+mheyrl
  Tp57577_TGAC_v2_mRNA40282 140 ATGTDKPVLTSgGTQKVGVKKALVFYGGKPPRGIKTNWIMHEYRL 184
                                *********9977788***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.4E-6548218IPR003441NAC domain
PROSITE profilePS5100562.03357218IPR003441NAC domain
PfamPF023654.5E-2858184IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009753Biological Processresponse to jasmonic acid
GO:0045995Biological Processregulation of embryonic development
GO:0048317Biological Processseed morphogenesis
GO:0080060Biological Processintegument development
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 397 aa     Download sequence    Send to blast
LWGNKNYKAN YRCCYYHNIT CSCSSLKKNH SHKNHSKNSY SSMESTDSST GSQQPNLPPG  60
FRFHPTDEEL VVHYLKKKAA SAPLPVAIIA EVDLYKFDPW ELPAKATFGE QEWYFFSPRD  120
RKYPNGARPN RAATSGYWKA TGTDKPVLTS GGTQKVGVKK ALVFYGGKPP RGIKTNWIMH  180
EYRLADNKPN NRPPGCDLGN KKNSLRLDDW VLCRIYKKSN THRSPVEHDR EDSMEDMISG  240
VPPSINVGQM NAATRFHHFS KMSTNSYNNA LLENDQNLLE GMMLSNNNLG VSNSKAELSF  300
VPTMTTSSNA NSPSKRTLSS LYNWNDEDVG AQVGTSSSNK RFNLESVVRN DQDNGTVATS  360
FASLLNNLPQ TPSLHQQQQT MLGSIPYQIQ GMNWYG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A3e-755622014170Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor of the NAC family (Probable). Together with NAC018/NARS2, regulates embryogenesis by regulating the development and degeneration of ovule integuments, a process required for intertissue communication between the embryo and the maternal integument (PubMed:18849494). {ECO:0000269|PubMed:18849494, ECO:0000305}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00361DAPTransfer from AT3G15510Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA40282
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By Jasmonic acid (JA). {ECO:0000269|PubMed:16805732}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ4553081e-132DQ455308.1 Medicago truncatula cDNA-AFLP fragment BT12M31_242 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013464756.10.0NAC transcription factor 56
SwissprotQ9LD441e-119NAC56_ARATH; NAC transcription factor 56
TrEMBLA0A072VB100.0A0A072VB10_MEDTR; NAC transcription factor-like protein
STRINGXP_007149615.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16233498
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15510.11e-120NAC domain containing protein 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]