PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA40372
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family bHLH
Protein Properties Length: 491aa    MW: 52777.1 Da    PI: 8.8485
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA40372genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH48.81.3e-15302347555
                                HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                        HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                hn+ Er+RRd+iN+++ +L++l+P++      K +Ka++L +++eY+k+Lq
  Tp57577_TGAC_v2_mRNA40372 302 HNQSERKRRDKINQRMKTLQKLVPNS-----SKTDKASMLDEVIEYLKQLQ 347
                                9************************8.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.49E-18295360IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.815297346IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.98E-17302351No hitNo description
Gene3DG3DSA:4.10.280.101.6E-17302354IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.4E-13302347IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.2E-18303352IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009567Biological Processdouble fertilization forming a zygote and endosperm
GO:0009506Cellular Componentplasmodesma
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 491 aa     Download sequence    Send to blast
MSQCVPSWDV DENPPPLPRT LSLRSSSNST ATLDVPMLDY DVAELTWENG QISMHGLGLP  60
KVPVKPPSTT AATNPSKETW EKPARASGTL ESIVNQATSF PHRGKSPFLA SGGVYGNMLV  120
PWLDPHRAAA IAVAANGLTV DALVPCSNIT KEQRSQAMDP IPRGGIGSCM VGGPTPVGSC  180
SAVMAEEGGL LAAAKRGRVA QVAGSGRDQS LSNSATFGRQ SQQVTLDTYD REFGKTGFTS  240
TSVASMDNTS SEKQCTRTTT VDDHDSVCHS RPTRKDADED EKKRETRKSS VSTKRSRAAA  300
IHNQSERKRR DKINQRMKTL QKLVPNSSKT DKASMLDEVI EYLKQLQAQV HMVNRFNMSS  360
MMMPMTMQQQ LQMSMMNPMG MGMGMGMAGM GMGMGMPGMG MDMNTMNRAN IPGMPPILHP  420
SAFMPMAASW DAGGSSDRLQ GPPPNGMADP LSTFFGCQSQ PMTMDAYSRI AAMYQHMQQQ  480
QPPGAPGSKS *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1305310ERKRRD
2306311RKRRDK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00034PBMTransfer from AT4G00050Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA40372
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004514235.10.0transcription factor UNE10
TrEMBLA0A396GWP60.0A0A396GWP6_MEDTR; Putative transcription factor bHLH family
STRINGXP_004514235.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF56763347
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00050.13e-91bHLH family protein