PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp57577_TGAC_v2_mRNA40403

Organism

Trifolium pratense

Taxonomic ID

57577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium

Family

SBP

Protein Properties

Length: 258aa MW: 28194.3 Da PI: 8.4291

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp57577_TGAC_v2_mRNA40403	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	131.6	2.7e-41	91	168	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cqv+gC++ l +akeyhrrhkvCe+hskap+v+v gleqrfCqqCsrfh +sefD++krsCrrrLa+hnerrrk+++ Tp57577_TGAC_v2_mRNA40403 91 RCQVDGCHVALMNAKEYHRRHKVCEMHSKAPKVVVLGLEQRFCQQCSRFHVVSEFDDSKRSCRRRLAGHNERRRKSSQ 168 6**************************************************************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	6.3E-34	88	153	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	32.137	89	166	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	1.24E-38	90	171	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	2.1E-32	92	165	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 258 aa Download sequence Send to blast
MDFGGNMFCL NNRDQSNNNN GNSNGFTTWG STSNGTPATA WNMDIFHVPV ENTADVNGGG 60 GGGGGLGDKR GKGYCGGGGG KVAAASFAVA RCQVDGCHVA LMNAKEYHRR HKVCEMHSKA 120 PKVVVLGLEQ RFCQQCSRFH VVSEFDDSKR SCRRRLAGHN ERRRKSSQDS VARNSSQGGC 180 ALSLLSSRTD SWLSPADLSV RCSAALSELI AENRAAIMAR QYVSDRDWHL HHHAVEDYRE 240 IQPESNYFPQ QMFPQTH*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	2e-31	92	165	11	84	squamosa promoter binding protein-like 4
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}.
UniProt	Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp57577_TGAC_v2_mRNA40403

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC151743	6e-84	AC151743.28 Medicago truncatula clone mth2-25e15, complete sequence.
GenBank	AC151915	6e-84	AC151915.8 Medicago truncatula clone mth2-30n12, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004513942.1	1e-128	squamosa promoter-binding-like protein 7
Swissprot	Q01JD1	2e-54	SPL7_ORYSI; Squamosa promoter-binding-like protein 7
Swissprot	Q7XT42	2e-54	SPL7_ORYSJ; Squamosa promoter-binding-like protein 7
TrEMBL	A0A1S2Z2N0	1e-127	A0A1S2Z2N0_CICAR; squamosa promoter-binding-like protein 7
STRING	XP_004513942.1	1e-127	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF9613	27	38

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33810.1	1e-36	squamosa promoter binding protein-like 3

Link Out ? help Back to Top
Phytozome	Tp57577_TGAC_v2_mRNA40403

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]