PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA40434
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family GATA
Protein Properties Length: 146aa    MW: 16733.1 Da    PI: 9.7736
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA40434genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA56.63.5e-1887122136
                       GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkglk 36 
                                Cs+C t++T++WR gp g  tLCnaCGl+y++++l+
  Tp57577_TGAC_v2_mRNA40434  87 CSHCETKDTTQWRVGPLGRNTLCNACGLRYKSHRLM 122
                                *********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577164.42E-1481130No hitNo description
PROSITE profilePS5011412.17681119IPR000679Zinc finger, GATA-type
SMARTSM004012.0E-1481131IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.102.7E-1585121IPR013088Zinc finger, NHR/GATA-type
PfamPF003201.2E-1587122IPR000679Zinc finger, GATA-type
CDDcd002021.04E-1287122No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 146 aa     Download sequence    Send to blast
MALNLNDSSI QYNKKKHLGE QFNYIPHDVL QNLEWCPTFS ETMERSKDKS LKAKCIEKNN  60
EKFCAIKKSK DKSLKVKGID KYSERMCSHC ETKDTTQWRV GPLGRNTLCN ACGLRYKSHR  120
LMEGYKPKGS SNSDVANHSN FHKTL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA40434
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1898726
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25830.11e-19GATA transcription factor 12