PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp57577_TGAC_v2_mRNA40586

Organism

Trifolium pratense

Taxonomic ID

57577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium

Family

M-type_MADS

Protein Properties

Length: 144aa MW: 16763.5 Da PI: 10.28

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp57577_TGAC_v2_mRNA40586	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	67	1.9e-21	75	119	1	45
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 kr en+ rq t++kR+ngi+KKA+ELS+LCd+++ +++fs+ gk Tp57577_TGAC_v2_mRNA40586 75 KRLENTNGRQATYAKRKNGIMKKASELSILCDIDIILLMFSPGGK 119 689***************************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF55455	2.09E-23	67	138	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	23.577	67	119	IPR002100	Transcription factor, MADS-box
SMART	SM00432	3.2E-28	67	126	IPR002100	Transcription factor, MADS-box
CDD	cd00120	1.46E-24	68	120	No hit	No description
PRINTS	PR00404	6.7E-18	69	89	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	3.8E-19	77	120	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	6.7E-18	89	104	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	6.7E-18	104	125	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 144 aa Download sequence Send to blast
MGNQTKSLTA PYSLGRSNDR FFWLPSSVHQ TYISSLSLYN NVQLNLPLPH QYSKPNFIFY 60 FFEICRMGRV KLKIKRLENT NGRQATYAKR KNGIMKKASE LSILCDIDII LLMFSPGGKP 120 SLCTGRRKYV FDYYYYYSLR DKI*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that forms heterodimers with the MADS-box proteins AGL66 and AGL104 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269\|PubMed:19211705}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp57577_TGAC_v2_mRNA40586

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CT025840	8e-76	CT025840.2 Medicago truncatula chromosome 5 clone mth4-39c23, COMPLETE SEQUENCE.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Swissprot	Q1PFA4	9e-29	AGL30_ARATH; Agamous-like MADS-box protein AGL30
TrEMBL	A0A396HSD2	6e-56	A0A396HSD2_MEDTR; Putative transcription factor MADS-type1 family
STRING	AES96803	1e-43	(Medicago truncatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF119	33	360

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G03060.1	5e-20	AGAMOUS-like 30

Link Out ? help Back to Top
Phytozome	Tp57577_TGAC_v2_mRNA40586

Publications ? help Back to Top
Zhang S, et al. FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development. Plant Physiol., 2018. 177(1): p. 285-299 [PMID:29523711]