PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp57577_TGAC_v2_mRNA40592

Organism

Trifolium pratense

Taxonomic ID

57577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium

Family

Dof

Protein Properties

Length: 392aa MW: 44333.3 Da PI: 7.7889

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp57577_TGAC_v2_mRNA40592	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	112.4	2.1e-35	138	198	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++++++cprC+ ++tkfCyynny+++qPr+fCk+C+ryWt+GG+ rn+ vG+grrknk ss Tp57577_TGAC_v2_mRNA40592 138 PDQIVPCPRCKNMDTKFCYYNNYNVKQPRHFCKNCQRYWTAGGTTRNMLVGAGRRKNKLSS 198 7899*****************************************************9876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	1.0E-26	135	195	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.6E-28	140	195	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	26.413	142	196	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	144	180	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 392 aa Download sequence Send to blast
MMINDSSMKL FGRTIFVTHN HIDVSTNDSS SEFDHHTHED LSDHSLHSSL SSSSPLEVNS 60 QTQHDAKRYK ETKSKKLTSV QDDDEVSQQT TEDLKTPTSS SLIENQKTPS SEAETSQLNS 120 TKLDEQSDMS QDKSLKKPDQ IVPCPRCKNM DTKFCYYNNY NVKQPRHFCK NCQRYWTAGG 180 TTRNMLVGAG RRKNKLSSSF SSDVSRCRQM STVLTFGSDS STSLKKKMNV ESHEEKIDTN 240 SYQSFPPQFP WNPAMSYPVT FYPNIAYYGG CLVPSWSVQP ISPQSCAPTL GKHSRDGNIF 300 KGFTSKGDEN NHEVEVSSSV MKANPAALSR SHVFHERRSK CPWENIKKSS EISFYEDLFE 360 DSIPPKSPLI RLYFQLSSDT YVRPMVDPRL S*

Sequence ? help Back to Top

Protein Sequence Length: 392 aa Download sequence Send to blast

MMINDSSMKL FGRTIFVTHN HIDVSTNDSS SEFDHHTHED LSDHSLHSSL SSSSPLEVNS  60
QTQHDAKRYK ETKSKKLTSV QDDDEVSQQT TEDLKTPTSS SLIENQKTPS SEAETSQLNS  120
TKLDEQSDMS QDKSLKKPDQ IVPCPRCKNM DTKFCYYNNY NVKQPRHFCK NCQRYWTAGG  180
TTRNMLVGAG RRKNKLSSSF SSDVSRCRQM STVLTFGSDS STSLKKKMNV ESHEEKIDTN  240
SYQSFPPQFP WNPAMSYPVT FYPNIAYYGG CLVPSWSVQP ISPQSCAPTL GKHSRDGNIF  300
KGFTSKGDEN NHEVEVSSSV MKANPAALSR SHVFHERRSK CPWENIKKSS EISFYEDLFE  360
DSIPPKSPLI RLYFQLSSDT YVRPMVDPRL S*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp57577_TGAC_v2_mRNA40592

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003613827.1	1e-143	cyclic dof factor 5
TrEMBL	A0A2K3LCX5	0.0	A0A2K3LCX5_TRIPR; Dof zinc finger protein (Fragment)
STRING	AES96785	1e-143	(Medicago truncatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF17310	3	7

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69570.1	2e-40	Dof family protein

Link Out ? help Back to Top
Phytozome	Tp57577_TGAC_v2_mRNA40592