PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA40793
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family SBP
Protein Properties Length: 100aa    MW: 11615.9 Da    PI: 11.0557
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA40793genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP48.32.6e-151304978
                               EEETTT--SS--S-STTTT-------S--- CS
                        SBP 49 fhelsefDeekrsCrrrLakhnerrrkkqa 78
                               fh+l efD++krsCrrrLa+hnerrrk+q+
  Tp57577_TGAC_v2_mRNA40793  1 FHQLAEFDQGKRSCRRRLAGHNERRRKPQP 30
                               9**************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.107.4E-4115IPR004333Transcription factor, SBP-box
SuperFamilySSF1036122.75E-12133IPR004333Transcription factor, SBP-box
PROSITE profilePS5114114.511128IPR004333Transcription factor, SBP-box
PfamPF031101.5E-8127IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 100 aa     Download sequence    Send to blast
FHQLAEFDQG KRSCRRRLAG HNERRRKPQP KSFLTSRFPK LSPYTLDNNG KGDNFLMDAS  60
YPKFSPRNVF QTPRTSEPIP GNQTTQITWQ QNNSTTPSDF
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA40793
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013467649.17e-41squamosa promoter-binding-like protein 15
TrEMBLA0A072VJ942e-39A0A072VJ94_MEDTR; Squamosa promoter-binding-like protein
TrEMBLA0A396JX083e-40A0A396JX08_MEDTR; Putative transcription factor SBP family
STRINGXP_007162307.14e-36(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF42083359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42200.11e-16squamosa promoter binding protein-like 9