PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA40938
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family FAR1
Protein Properties Length: 107aa    MW: 12583 Da    PI: 5.2677
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA40938genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR1349.3e-113297264
                       FAR1  2 fYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkk..tekerrtraetrtgCka 64
                                Y+e++ ++GFsvrk k+ +  ++++++  ++f+Csk+g++++e +   ++k   +ra +rt+Ck 
  Tp57577_TGAC_v2_mRNA40938 32 LYQEHGFKMGFSVRKGKELYYdNDKKNTRLKDFYCSKQGFKNNEPEGeiASKVAYQRADSRTNCKV 97
                               7**************98765526666677899*********99998866667777*********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031016.0E-83296IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 107 aa     Download sequence    Send to blast
MEDNECEPVE IDKYKDIFLG QVVHSKDEAY NLYQEHGFKM GFSVRKGKEL YYDNDKKNTR  60
LKDFYCSKQG FKNNEPEGEI ASKVAYQRAD SRTNCKVYGE CWYESY*
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA40938
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1493041e-109AC149304.11 Medicago truncatula clone mth2-76g4, complete sequence.
GenBankAC1495811e-109AC149581.27 Medicago truncatula clone mth2-126m13, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013452265.29e-55protein FAR1-RELATED SEQUENCE 5
TrEMBLA0A072UB453e-53A0A072UB45_MEDTR; FAR1 DNA-binding domain protein
STRINGAES755862e-38(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3607938
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28530.12e-07FAR1-related sequence 10