PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA41115
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family FAR1
Protein Properties Length: 236aa    MW: 26670.1 Da    PI: 6.3915
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA41115genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR164.62.7e-2085173289
                       FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevtklel 83 
                                fY+ +Ak+ GFsvrk +  ++ ++g+i ++tf Cs+eg+re++  + ++++r++++etr+ C+ak +v+ +  + +w+vt le 
  Tp57577_TGAC_v2_mRNA41115  85 FYCWFAKTSGFSVRKGHVVRN-HEGNILQQTFLCSCEGFREDRGLTlENRKREPKNETRCWCNAKCRVHVDIvSMRWYVTLLEI 167
                                9*****************999.7788*****************9997889999****************9999*********** PP

                       FAR1  84 eHnHel 89 
                                +H+H+l
  Tp57577_TGAC_v2_mRNA41115 168 DHTHDL 173
                                ****99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031013.7E-1885174IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
LGTDISNGGP SYSVGGGSSN PDESLDGSFD EIWNDTEDQS FGYGCEVEAV VIKDMADIMK  60
IDLNNFRVAD VRKYEFVGLD VAYMFYCWFA KTSGFSVRKG HVVRNHEGNI LQQTFLCSCE  120
GFREDRGLTL ENRKREPKNE TRCWCNAKCR VHVDIVSMRW YVTLLEIDHT HDLLGVTLCG  180
LLPAHRKMSQ GDIDEIERNR KAGIRPYQVY GSMANTSGGF HKVGFVKKDL YNQVGK
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA41115
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024630796.16e-65protein FAR1-RELATED SEQUENCE 5
TrEMBLA0A2K3MEL21e-140A0A2K3MEL2_TRIPR; FAR1 DNA-binding domain protein (Fragment)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3290752
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28530.13e-16FAR1-related sequence 10