PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA41208
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family TALE
Protein Properties Length: 131aa    MW: 15316.2 Da    PI: 9.7815
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA41208genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox31.82.4e-10721072055
                                HHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
                   Homeobox  20 eknrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                                +k +yp+++++ eLAk +gL+++q+ +WF N+R ++
  Tp57577_TGAC_v2_mRNA41208  72 YKWPYPTEADKIELAKTTGLDQKQINNWFINQRKRH 107
                                4679*****************************985 PP
2ELK33.68.3e-122748122
                        ELK  1 ELKhqLlrKYsgyLgsLkqEFs 22
                               ELK++LlrK+++++g+Lk EFs
  Tp57577_TGAC_v2_mRNA41208 27 ELKDRLLRKFGSHIGTLKLEFS 48
                               9********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011886.5E-62748IPR005539ELK domain
PROSITE profilePS512139.832747IPR005539ELK domain
PfamPF037891.1E-82748IPR005539ELK domain
PROSITE profilePS5007113.24847110IPR001356Homeobox domain
SuperFamilySSF466891.58E-2048121IPR009057Homeodomain-like
SMARTSM003896.6E-1449114IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.604.2E-2952112IPR009057Homeodomain-like
CDDcd000863.39E-1259111No hitNo description
PfamPF059201.4E-1867106IPR008422Homeobox KN domain
PROSITE patternPS00027085108IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 131 aa     Download sequence    Send to blast
DGASSDEDLS TGDGEVQDGQ SRGEDRELKD RLLRKFGSHI GTLKLEFSKK KKKGKLPKEA  60
RQTLLQWWNL HYKWPYPTEA DKIELAKTTG LDQKQINNWF INQRKRHWKP SENMQFSMME  120
NFTGRFLSEE *
Functional Description ? help Back to Top
Source Description
UniProtPlays a role in meristem function. Contributes to the shoot apical meristem (SAM) maintenance and organ separation by controlling boundary establishment in embryo in a CUC1, CUC2 and STM-dependent manner. Involved in maintaining cells in an undifferentiated, meristematic state. Probably binds to the DNA sequence 5'-TGAC-3'. {ECO:0000269|PubMed:16798887}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA41208
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Seems to be repressed by AS2 and AS1 but induced by STM, CUC1 and CUC2. {ECO:0000269|PubMed:11311158, ECO:0000269|PubMed:16798887}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1472301e-166BT147230.1 Medicago truncatula clone JCVI-FLMt-16N5 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003613183.16e-81homeobox protein knotted-1-like 6
SwissprotQ84JS66e-64KNAT6_ARATH; Homeobox protein knotted-1-like 6
TrEMBLA0A2Z6NAJ41e-79A0A2Z6NAJ4_TRISU; Uncharacterized protein
TrEMBLG7K0601e-79G7K060_MEDTR; Homeobox knotted-like protein
STRINGAES961412e-80(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF62034125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G23380.11e-57KNOTTED1-like homeobox gene 6
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Khan M, et al.
    Repression of Lateral Organ Boundary Genes by PENNYWISE and POUND-FOOLISH Is Essential for Meristem Maintenance and Flowering in Arabidopsis.
    Plant Physiol., 2015. 169(3): p. 2166-86
    [PMID:26417006]