PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA4121
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family LBD
Protein Properties Length: 144aa    MW: 16419.6 Da    PI: 6.7339
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA4121genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260120.31.1e-37101101101
                    DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqq 85 
                               +CaaCk +rr+C++dC+++pyfp ++p++f  vh+++G snv k+l++lp++ r++a+++l+ eA++r++dPvyG+vg+i+kl +
  Tp57577_TGAC_v2_mRNA4121  10 RCAACKNQRRRCPSDCIFSPYFPPNDPQRFVSVHRIYGGSNVGKMLQQLPNNVRQQAANTLYLEAKCRIQDPVYGCVGIISKLYE 94 
                               6************************************************************************************ PP

                    DUF260  86 qleqlkaelallkeel 101
                               q++ ++ ela++++++
  Tp57577_TGAC_v2_mRNA4121  95 QIHDTEIELAKIQTQI 110
                               ***********99875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089123.8019110IPR004883Lateral organ boundaries, LOB
PfamPF031956.4E-3810107IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 144 aa     Download sequence    Send to blast
FDFDIMINGR CAACKNQRRR CPSDCIFSPY FPPNDPQRFV SVHRIYGGSN VGKMLQQLPN  60
NVRQQAANTL YLEAKCRIQD PVYGCVGIIS KLYEQIHDTE IELAKIQTQI ACHKPQNPQF  120
EAESNFNDLS TVDAELNLNF LPPQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A1e-331111012111LOB family transfactor Ramosa2.1
5ly0_B1e-331111012111LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA4121
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU1798946e-64CU179894.1 Medicago truncatula chromosome 5 clone mth4-21m22, COMPLETE SEQUENCE.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004491406.11e-84LOB domain-containing protein 23-like
SwissprotP594676e-47LBD23_ARATH; LOB domain-containing protein 23
SwissprotP594686e-47LBD24_ARATH; LOB domain-containing protein 24
TrEMBLA0A1S2XPB03e-83A0A1S2XPB0_CICAR; LOB domain-containing protein 23-like
STRINGXP_004491406.14e-84(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF36973066
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26660.13e-49LOB domain-containing protein 24