PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA41225
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family FAR1
Protein Properties Length: 195aa    MW: 22663.6 Da    PI: 9.7858
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA41225genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR168.91.2e-2121109190
                       FAR1   1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtklel 83 
                                kf+ +Y+ ++GF vrk++++ s + +g  t+ +fvC keg r+++k++  k+ + r+etrt+C a++ +k++  ++w+v++++ 
  Tp57577_TGAC_v2_mRNA41225  21 KFWVDYGGRMGFGVRKQYKHISkDGSGLATSCRFVCCKEGLRKSDKRD-FKTIKLRPETRTNCPARIGLKNM-GENWMVHDFVV 102
                                69***************9999834567899***************999.999********************.9********** PP

                       FAR1  84 eHnHela 90 
                                eHnH l+
  Tp57577_TGAC_v2_mRNA41225 103 EHNHMLN 109
                                ****996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.3E-1721109IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 195 aa     Download sequence    Send to blast
MQEDWMPKQG MLFDNIDDVW KFWVDYGGRM GFGVRKQYKH ISKDGSGLAT SCRFVCCKEG  60
LRKSDKRDFK TIKLRPETRT NCPARIGLKN MGENWMVHDF VVEHNHMLNT QETTHMLSSQ  120
RKVSEIHCQQ IDLADYAGLQ QRSSXXXXXX XXXXXXXGGR TNLGFTRLDQ KNYLKKRRQN  180
SLVNGEAGYL LQYF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA41225
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024632821.16e-85protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A2Z6MJF11e-105A0A2Z6MJF1_TRISU; Uncharacterized protein
STRINGAES877118e-73(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF30451449
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-18FAR1-related sequence 5