PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA41280
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family ERF
Protein Properties Length: 208aa    MW: 23112.6 Da    PI: 4.2711
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA41280genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2552e-171767155
                        AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                               s y+GVr +k +g++v+eIr p++   r+r++lg+f+tae+Aa+a +aa  +l+g
  Tp57577_TGAC_v2_mRNA41280 17 SLYRGVRKRK-WGKYVSEIRLPNS---RQRIWLGSFDTAEKAARAFDAATFCLRG 67
                               57*****999.**********933...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541713.14E-201776IPR016177DNA-binding domain
CDDcd000182.02E-291775No hitNo description
PROSITE profilePS5103221.2461875IPR001471AP2/ERF domain
PfamPF008472.8E-101867IPR001471AP2/ERF domain
SMARTSM003806.4E-321881IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.4E-291876IPR001471AP2/ERF domain
PRINTSPR003672.8E-101930IPR001471AP2/ERF domain
PRINTSPR003672.8E-104157IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 208 aa     Download sequence    Send to blast
MVKSNVEKTA AERSDSSLYR GVRKRKWGKY VSEIRLPNSR QRIWLGSFDT AEKAARAFDA  60
ATFCLRGSGA KFNFPSNPPD IPGTSSMTHS EIQAAATRFA YSEPRNENSG RPDNEIIETP  120
SSSEVTALLP MEMPSPALSE TTVQTESDVT DNGLFKDLFS ETGSGYSMFP GIDDFCGEFY  180
LPEMTNFDYE EENMDGVIVL DTFLWDF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A4e-1714761073Ethylene-responsive transcription factor ERF096
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA41280
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003595362.11e-107ethylene-responsive transcription factor ERF017
TrEMBLA0A2K3L6561e-152A0A2K3L656_TRIPR; Ethylene-responsive transcription factor erf017-like protein
STRINGAES656131e-107(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14793399
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19210.16e-45ERF family protein