PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA4139
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family GeBP
Protein Properties Length: 239aa    MW: 26427 Da    PI: 4.1295
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA4139genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57333.41.3e-10201239139
                    DUF573   1 klfqrlwseeDeivlLqGlidfkaktgkspsddidafye 39 
                               klfqr+++e+De+++L Gl+df+aktg +p +  +afy+
  Tp57577_TGAC_v2_mRNA4139 201 KLFQRVFNEDDELAILEGLVDFTAKTGNDPAKYPTAFYD 239
                               579**************************9999999885 PP
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MAKKRQRTPA ASKDDEPLTP VSKNDQPLTS ASKNDPPPPS KKPEEEKKDE DDEDEEDSSS  60
EEASSSEGEE DDDSEDDESE EEQPPLSKPA SKTPQTDNDK SESKKDEDDE DEEETDTDSD  120
QEPPPKLKSI NSKSIDETLK SKPQPKSSAA PARSGTKRSA ESDTKLVDEA KQSKKKKTTA  180
AADDKKEQEE DNKKPGDDSK KLFQRVFNED DELAILEGLV DFTAKTGNDP AKYPTAFYD
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA4139
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2K3K2X31e-115A0A2K3K2X3_TRIPR; Mediator-associated protein 1-like (Fragment)
TrEMBLA0A2K3KSE01e-116A0A2K3KSE0_TRIPR; Mediator-associated protein 1-like (Fragment)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18313490
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00390.13e-08DNA-binding storekeeper protein-related transcriptional regulator