PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp57577_TGAC_v2_mRNA41450

Organism

Trifolium pratense

Taxonomic ID

57577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium

Family

C3H

Protein Properties

Length: 179aa MW: 19398.4 Da PI: 7.9248

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp57577_TGAC_v2_mRNA41450	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	32	2.1e-10	36	59	4	27
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 +C ++ + G+Ck+G+ CkF H++ Tp57577_TGAC_v2_mRNA41450 36 QPCTHYTQRGICKFGSACKFDHPM 59 59********************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00356	2.0E-5	32	59	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	13.779	32	60	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	1.7E-6	35	62	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	2.7E-5	36	57	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	4.3E-8	36	59	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:1.10.418.10	2.0E-11	108	173	IPR001715	Calponin homology domain
SuperFamily	SSF47576	6.94E-20	113	176	IPR001715	Calponin homology domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 179 aa Download sequence Send to blast
MLPHIISCHY FYSSLIFLAF ISLLVQSFVF GLQGAQPCTH YTQRGICKFG SACKFDHPMG 60 SLSYSPSASS LADMPVAPYP AHVNLQTRAM AKDGGSKSSS FLKTATTTVH HAINESEKAS 120 YVAHINSYLA EDKFLKQFLP LDPATNALFD LAKDGVLLCK LINVAVPGTI DERYAIAF*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1pxy_A	1e-23	115	173	6	64	fimbrin-like protein
1pxy_B	1e-23	115	173	6	64	fimbrin-like protein
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Cross-links actin filaments (F-actin) in a calcium independent manner. Induces the formation of actin bundles. Stabilizes and prevents F-actin depolymerization mediated by latrunculin B (LatB). {ECO:0000269\|PubMed:21098731}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp57577_TGAC_v2_mRNA41450

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CU424491	2e-79	CU424491.2 Medicago truncatula chromosome 5 clone mth2-61f13, COMPLETE SEQUENCE.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020234342.1	4e-49	fimbrin-5
Swissprot	Q9FKI0	3e-42	FIMB5_ARATH; Fimbrin-5
TrEMBL	A0A2Z6NIM6	3e-54	A0A2Z6NIM6_TRISU; Uncharacterized protein
STRING	XP_004491610.1	3e-47	(Cicer arietinum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47850.2	3e-12	C3H family protein

Link Out ? help Back to Top
Phytozome	Tp57577_TGAC_v2_mRNA41450

Publications ? help Back to Top
Wu Y, et al. Arabidopsis FIMBRIN5, an actin bundling factor, is required for pollen germination and pollen tube growth. Plant Cell, 2010. 22(11): p. 3745-63 [PMID:21098731] Su H, et al. FIMBRIN1 is involved in lily pollen tube growth by stabilizing the actin fringe. Plant Cell, 2012. 24(11): p. 4539-54 [PMID:23150633] Zhang M,Zhang R,Qu X,Huang S Arabidopsis FIM5 decorates apical actin filaments and regulates their organization in the pollen tube. J. Exp. Bot., 2016. 67(11): p. 3407-17 [PMID:27117336] Zhang R, et al. The Structurally Plastic CH2 Domain Is Linked to Distinct Functions of Fimbrins/Plastins. J. Biol. Chem., 2016. 291(34): p. 17881-96 [PMID:27261463] Su H, et al. Fimbrins 4 and 5 Act Synergistically During Polarized Pollen Tube Growth to Ensure Fertility in Arabidopsis. Plant Cell Physiol., 2017. 58(11): p. 2006-2016 [PMID:29036437]