PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp57577_TGAC_v2_mRNA41565

Organism

Trifolium pratense

Taxonomic ID

57577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium

Family

bZIP

Protein Properties

Length: 455aa MW: 49806.1 Da PI: 6.7122

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp57577_TGAC_v2_mRNA41565	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	33.2	1.1e-10	195	236	5	46
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLk 46 k rr+++NReAA++sR+RKka++++Le+ L++ ++L+ Tp57577_TGAC_v2_mRNA41565 195 KTLRRLAQNREAAKKSRLRKKAYVQQLETSRLRLSNLEQDLQ 236 6789************************98888887777665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	1.4E-7	187	237	No hit	No description
SMART	SM00338	2.9E-6	191	253	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.013	193	237	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.69E-6	195	239	No hit	No description
Pfam	PF00170	2.7E-8	195	236	IPR004827	Basic-leucine zipper domain
PROSITE pattern	PS00036	0	198	213	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	8.3E-27	297	372	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 455 aa Download sequence Send to blast
MASQRIGEIG LSESGPSSQH VPYGVLHGIT NSTSTLMNQG SAFDFGELEE AIVLQGIKIR 60 NDEGKSSALF TSKPAATLEM FPSWPIRFQQ SPRVVASLTS PSLTIPYGGS KSGGESTDSG 120 STELQFETDS PISVKASSSD HHNNHNHVFD QQLQQETATD DSLRTGTSQN QSKAKSHNEK 180 KKGAVSTSEK TLDPKTLRRL AQNREAAKKS RLRKKAYVQQ LETSRLRLSN LEQDLQRARS 240 QVCVRSSAVK MHAVSTYKSS DLDQTGLFLG CGGGNISPGA AMFDMEYARW LEEDQRQLAE 300 LRAGLQAALP DNELRVLVDG YLYHYDELFR LKGVAVKSDV FHLIKGIWAS PAERPFIWIG 360 GFKPTELITM LTQQLEPLAE QQLAGIMELG KSAQQAEEAL SKGHEQLHHA IVDTIAGGDV 420 IDGVQQMVAA MARISNLEGF VYQVNKLIIS TLYM*

Sequence ? help Back to Top

Protein Sequence Length: 455 aa Download sequence Send to blast

MASQRIGEIG LSESGPSSQH VPYGVLHGIT NSTSTLMNQG SAFDFGELEE AIVLQGIKIR  60
NDEGKSSALF TSKPAATLEM FPSWPIRFQQ SPRVVASLTS PSLTIPYGGS KSGGESTDSG  120
STELQFETDS PISVKASSSD HHNNHNHVFD QQLQQETATD DSLRTGTSQN QSKAKSHNEK  180
KKGAVSTSEK TLDPKTLRRL AQNREAAKKS RLRKKAYVQQ LETSRLRLSN LEQDLQRARS  240
QVCVRSSAVK MHAVSTYKSS DLDQTGLFLG CGGGNISPGA AMFDMEYARW LEEDQRQLAE  300
LRAGLQAALP DNELRVLVDG YLYHYDELFR LKGVAVKSDV FHLIKGIWAS PAERPFIWIG  360
GFKPTELITM LTQQLEPLAE QQLAGIMELG KSAQQAEEAL SKGHEQLHHA IVDTIAGGDV  420
IDGVQQMVAA MARISNLEGF VYQVNKLIIS TLYM*

Functional Description ? help Back to Top
Source	Description
UniProt	Together with TGA10, basic leucine-zipper transcription factor required for anther development, probably via the activation of SPL expression in anthers and via the regulation of genes with functions in early and middle tapetal development (PubMed:20805327). Required for signaling responses to pathogen-associated molecular patterns (PAMPs) such as flg22 that involves chloroplastic reactive oxygen species (ROS) production and subsequent expression of H(2)O(2)-responsive genes (PubMed:27717447). {ECO:0000269\|PubMed:20805327, ECO:0000269\|PubMed:27717447}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00131	DAP	Transfer from AT1G08320	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp57577_TGAC_v2_mRNA41565

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by flg22 in leaves. {ECO:0000269\|PubMed:27717447}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003606112.1	0.0	transcription factor TGA9
Refseq	XP_024637666.1	0.0	transcription factor TGA9
Swissprot	Q93XM6	1e-134	TGA9_ARATH; Transcription factor TGA9
TrEMBL	G7JIE0	0.0	G7JIE0_MEDTR; BZIP family transcription factor
STRING	AES88309	0.0	(Medicago truncatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4555	33	57

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08320.3	1e-126	bZIP family protein

Link Out ? help Back to Top
Phytozome	Tp57577_TGAC_v2_mRNA41565

Publications ? help Back to Top
Gutsche N,Zachgo S The N-Terminus of the Floral Arabidopsis TGA Transcription Factor PERIANTHIA Mediates Redox-Sensitive DNA-Binding. PLoS ONE, 2016. 11(4): p. e0153810 [PMID:27128442] Noshi M,Mori D,Tanabe N,Maruta T,Shigeoka S Arabidopsis clade IV TGA transcription factors, TGA10 and TGA9, are involved in ROS-mediated responses to bacterial PAMP flg22. Plant Sci., 2016. 252: p. 12-21 [PMID:27717447] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]