PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA4173
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family MYB_related
Protein Properties Length: 156aa    MW: 17376.6 Da    PI: 12.0623
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA4173genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.14e-083779345
                              SS-HHHHHHHH.HHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
           Myb_DNA-binding  3 rWTteEdellv.davkqlGggtWktIartmgkgRtlkqcksrwq 45
                               WT+eE++ +  +++    g+ Wk I++ + k+Rt+ q+ s+ q
  Tp57577_TGAC_v2_mRNA4173 37 IWTEEEHKMFStRLIFIVKGK-WKQISKDFVKTRTPTQVASHAQ 79
                              6*********72566666666.********************88 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.00253484IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.7E-53481IPR009057Homeodomain-like
SuperFamilySSF466897.8E-113683IPR009057Homeodomain-like
TIGRFAMsTIGR015573.7E-83779IPR006447Myb domain, plants
CDDcd001671.76E-43879No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 156 aa     Download sequence    Send to blast
MLRGILFSVR TKISATAGNP VSLILPSIRF VLVNEGIWTE EEHKMFSTRL IFIVKGKWKQ  60
ISKDFVKTRT PTQVASHAQG HSLPRSNQNL RHGGKPSVFD LTIHTVSGNK FLKTLSKLAH  120
QLKLQVMLRD ILFPVRTKIS ATVGNLVSLI LPSIR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA4173
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF32133271
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G70000.23e-15MYB_related family protein