PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp57577_TGAC_v2_mRNA41748

Organism

Trifolium pratense

Taxonomic ID

57577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium

Family

HRT-like

Protein Properties

Length: 244aa MW: 27778.8 Da PI: 10.0779

Description

HRT-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp57577_TGAC_v2_mRNA41748	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HRT-like	59.7	4.4e-19	197	227	1	31
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 +CGvil+dGs+C++ Pv++R RC eHKGmRi Tp57577_TGAC_v2_mRNA41748 197 VCGVILDDGSICTKLPVEKRVRCLEHKGMRI 227 7*****************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 244 aa Download sequence Send to blast
LGREIFKLTS DPHRVVVVYL GKADNVRTRL QCYGRNGAHL GKGCYSFESS DHDQMGRSLF 60 HEIFFQGFPI VYRWAPMQTK GDALQTESQL LTTFDYAWNT INNGKRRPDD ILEMLNKITS 120 GARTRTISDV AKSLIPFTQK KVGIPIKSRK LPMTDNKSDE SDNGNYNFLS RVFKFNRLRP 180 KIVQDTTDCA FENHGKVCGV ILDDGSICTK LPVEKRVRCL EHKGMRINVI TAKAIRRSKS 240 ESET

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp57577_TGAC_v2_mRNA41748

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003620925.1	1e-129	protein EFFECTOR OF TRANSCRIPTION 2
TrEMBL	A0A2K3MMR1	1e-180	A0A2K3MMR1_TRIPR; Transcription factor
STRING	AES77143	1e-128	(Medicago truncatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF9409	31	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G56780.1	1e-48	effector of transcription2

Link Out ? help Back to Top
Phytozome	Tp57577_TGAC_v2_mRNA41748