PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA41792
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family WRKY
Protein Properties Length: 142aa    MW: 16155.2 Da    PI: 8.4602
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA41792genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY35.52e-11121141222
                                --SS-EEEEEEE--TT-SS-E CS
                       WRKY   2 dDgynWrKYGqKevkgsefpr 22 
                                dDgy+WrKYGqK++k+s++pr
  Tp57577_TGAC_v2_mRNA41792 121 DDGYRWRKYGQKSIKNSPNPR 141
                                8*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081112.886115141IPR003657WRKY domain
Gene3DG3DSA:2.20.25.807.8E-10117141IPR003657WRKY domain
SuperFamilySSF1182901.44E-8117141IPR003657WRKY domain
PfamPF031061.5E-7121141IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 142 aa     Download sequence    Send to blast
MSKTMMEKIM TSNWSEGSEL LRNLLVDESN SLLMLPQGIV NEVTNTSHDD FSKDQDFNRF  60
ISNIYSGPTI SDIENALLVT NHSNHFQQIS STRVSILERS LSKIENKYTL KIKCFGNGMS  120
DDGYRWRKYG QKSIKNSPNP R*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA41792
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013448880.19e-80probable WRKY transcription factor 49
SwissprotQ9FHR75e-25WRK49_ARATH; Probable WRKY transcription factor 49
TrEMBLA0A072TZR72e-78A0A072TZR7_MEDTR; Putative transcription factor WRKY family
STRINGXP_004514387.13e-65(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF71183449
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43290.12e-27WRKY DNA-binding protein 49