PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp57577_TGAC_v2_mRNA4181

Organism

Trifolium pratense

Taxonomic ID

57577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium

Family

HD-ZIP

Protein Properties

Length: 291aa MW: 33188 Da PI: 6.4502

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp57577_TGAC_v2_mRNA4181	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	56.8	3.7e-18	88	141	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+++++ eq+++Le+ Fe +++ e++ +LA+ l+L+ rqV +WFqNrRa++k Tp57577_TGAC_v2_mRNA4181 88 KKRRLNMEQVKTLEKSFELGNKLEPERKMQLARALNLQPRQVAIWFQNRRARWK 141 456899***********************************************9 PP
2	HD-ZIP_I/II	131.2	4.1e-42	87	177	1	91
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeve 85 ekkrrl+ eqvk+LE+sFe +kLeperK++lar+L+lqprqva+WFqnrRAR+ktkqlEkdy++Lkr+yda+k +n++L+++++ Tp57577_TGAC_v2_mRNA4181 87 EKKRRLNMEQVKTLEKSFELGNKLEPERKMQLARALNLQPRQVAIWFQNRRARWKTKQLEKDYDVLKRQYDAVKLDNDALQAQNQ 171 69********************************************************************************* PP HD-ZIP_I/II 86 eLreel 91 +L++e+ Tp57577_TGAC_v2_mRNA4181 172 KLQAEI 177 *987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	9.84E-20	81	145	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.394	83	143	IPR001356	Homeobox domain
SMART	SM00389	4.6E-18	86	147	IPR001356	Homeobox domain
CDD	cd00086	9.06E-16	88	144	No hit	No description
Pfam	PF00046	1.7E-15	88	141	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	9.0E-19	90	150	IPR009057	Homeodomain-like
PROSITE pattern	PS00027	0	118	141	IPR017970	Homeobox, conserved site
Pfam	PF02183	1.7E-16	143	183	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 291 aa Download sequence Send to blast
MTGLDKAMHE MAFFQANFML QTPHHHDDHH QHHHPPPSLN SILPQDYHGG PSFLGKRSMS 60 FSSGIELGEE ANIAEEDLSD DGSQAGEKKR RLNMEQVKTL EKSFELGNKL EPERKMQLAR 120 ALNLQPRQVA IWFQNRRARW KTKQLEKDYD VLKRQYDAVK LDNDALQAQN QKLQAEILAL 180 KNREPTESIN LNKETEGSSS NRSENSSDIK LDISRTPASD SPLSTQHHTF FPPSSRPSGG 240 IAQLFQTTSR PELQCQKIDQ LVKEESLSNM FCGMDDQAGF WPWLEQQHFN *

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	135	143	RRARWKTKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that may act in the sucrose-signaling pathway. {ECO:0000269\|PubMed:11292072}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp57577_TGAC_v2_mRNA4181

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003613642.1	0.0	homeobox-leucine zipper protein ATHB-13
Swissprot	Q8LC03	1e-113	ATB13_ARATH; Homeobox-leucine zipper protein ATHB-13
TrEMBL	G7KB59	1e-179	G7KB59_MEDTR; Homeobox leucine zipper ATHB-like protein
STRING	AES96600	1e-180	(Medicago truncatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1271	33	106

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69780.1	1e-106	HD-ZIP family protein

Link Out ? help Back to Top
Phytozome	Tp57577_TGAC_v2_mRNA4181

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Ribone PA,Capella M,Chan RL Functional characterization of the homeodomain leucine zipper I transcription factor AtHB13 reveals a crucial role in Arabidopsis development. J. Exp. Bot., 2015. 66(19): p. 5929-43 [PMID:26136262] Wang X, et al. Overexpressed BRH1, a RING finger gene, alters rosette leaf shape in Arabidopsis thaliana. Sci China Life Sci, 2018. 61(1): p. 79-87 [PMID:28887625] Ebrahimian-Motlagh S, et al. JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13. Front Plant Sci, 2017. 8: p. 2118 [PMID:29326734]