PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA41982
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family Trihelix
Protein Properties Length: 233aa    MW: 26296.4 Da    PI: 4.5857
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA41982genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix68.21.7e-2158151185
                   trihelix   1 rWtkqevlaLiearremeerlrrgk.........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtses 75 
                                rWt+qe+l+Liea++ +e+  +  +         +  p+W+ vs+ ++++g++r+++qC+++w nl ++++kik++e + ++es
  Tp57577_TGAC_v2_mRNA41982  58 RWTRQETLVLIEAKKVIENGDQVCRyrsstsglvQTDPKWDLVSSLCQQHGVKRGAVQCRKRWGNLLTDFRKIKKWETSIKNES 141
                                8**************9988777432334467788**********************************************9999 PP

                   trihelix  76 sstcpyfdql 85 
                                +s + + +++
  Tp57577_TGAC_v2_mRNA41982 142 ESFWIMRNDV 151
                                9888887765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.6E-1157147No hitNo description
PROSITE profilePS500906.65558124IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.609.3E-658125IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0050777Biological Processnegative regulation of immune response
GO:0071219Biological Processcellular response to molecule of bacterial origin
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    Send to blast
MSEMNEPNSE KVCETIAEPN SEKVCETSAE SPTTPVGKQP EEAEPKSGER IKATRHPRWT  60
RQETLVLIEA KKVIENGDQV CRYRSSTSGL VQTDPKWDLV SSLCQQHGVK RGAVQCRKRW  120
GNLLTDFRKI KKWETSIKNE SESFWIMRND VRKENKLPGF FDSVVYNVLD GGVCTAAAFP  180
LTLIKMMPRA AENGDQVEGV AAIEQGNKED EIEEDEDEAI VDSEKMGWST EEE
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor that binds DNA and plays a negative role in regulating microbe-associated molecular patterns-(MAMPs, e.g. flg22, elf18, chitin, and LPS) triggered immunity (PTI) by negatively regulating immune gene expression. {ECO:0000269|PubMed:25770109}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00288DAPTransfer from AT2G33550Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA41982
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1267940.0AC126794.15 Medicago truncatula chromosome 4 clone mth2-24j7, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003630592.11e-134trihelix transcription factor ASR3
SwissprotQ8VZ202e-49ASR3_ARATH; Trihelix transcription factor ASR3
TrEMBLA0A2K3PKG91e-170A0A2K3PKG9_TRIPR; Trihelix transcription factor GT-2-like protein
STRINGAET050681e-133(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21653375
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33550.11e-51Trihelix family protein
Publications ? help Back to Top
  1. Vidal EA, et al.
    Integrated RNA-seq and sRNA-seq analysis identifies novel nitrate-responsive genes in Arabidopsis thaliana roots.
    BMC Genomics, 2013. 14: p. 701
    [PMID:24119003]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]