PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp57577_TGAC_v2_mRNA42048

Organism

Trifolium pratense

Taxonomic ID

57577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium

Family

MYB_related

Protein Properties

Length: 117aa MW: 13243.6 Da PI: 4.3928

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp57577_TGAC_v2_mRNA42048	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	29.6	1.7e-09	1	22	24	46
HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 24 WktIartmgkgRtlkqcksrwqk 46 W++Ia++++ gRt++++k++w++ Tp57577_TGAC_v2_mRNA42048 1 WSKIAKHLP-GRTDNEIKNYWRT 22 *******.*********96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF00249	2.3E-7	1	22	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	1.25E-7	1	32	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	2.3E-12	1	33	IPR009057	Homeodomain-like
CDD	cd00167	3.12E-8	1	22	No hit	No description
PROSITE profile	PS51294	16.257	1	28	IPR017930	Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 117 aa Download sequence Send to blast
WSKIAKHLPG RTDNEIKNYW RTRIQKHIKQ AENSQQQSSS DIQINDNDNQ IGSTSQISAM 60 PEPMDINIIS PPSYQGMLEP FPNQFPTISD QSSCCTNDNN YWSMEDLLSL QLLNGD*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. {ECO:0000305}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp57577_TGAC_v2_mRNA42048

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004516765.1	4e-54	myb-related protein 305-like isoform X1
Refseq	XP_004516766.1	4e-54	myb-related protein 305-like isoform X2
Swissprot	P81391	2e-25	MYB05_ANTMA; Myb-related protein 305
TrEMBL	A0A1S2Z849	1e-52	A0A1S2Z849_CICAR; myb-related protein 305-like isoform X2
TrEMBL	A0A1S2Z855	1e-52	A0A1S2Z855_CICAR; myb-related protein 305-like isoform X1
STRING	XP_004516765.1	2e-53	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3305	34	69

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G27810.1	2e-19	myb domain protein 21

Link Out ? help Back to Top
Phytozome	Tp57577_TGAC_v2_mRNA42048

Publications ? help Back to Top
Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C Expression patterns of myb genes from Antirrhinum flowers. Plant Cell, 1991. 3(2): p. 115-25 [PMID:1840903]