PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp57577_TGAC_v2_mRNA42188

Organism

Trifolium pratense

Taxonomic ID

57577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium

Family

NF-YB

Protein Properties

Length: 219aa MW: 24532.7 Da PI: 4.5662

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp57577_TGAC_v2_mRNA42188	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	96	3.2e-30	24	109	7	92
NF-YB 7 flPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkky 90 i v++im++ lP++akis ++ke++q+c+s+f +ts+a+++c re rk ++++d+lwa+ +lGf++y +++ ylk+y Tp57577_TGAC_v2_mRNA42188 24 AAAIKKVTKIMRQLLPQKAKISTNSKEMIQKCISKFKDIITSKANERCLREYRKILKAEDILWAMKSLGFDNYETAFTHYLKNY 107 457899****************************************************************************** PP NF-YB 91 re 92 r+ Tp57577_TGAC_v2_mRNA42188 108 RD 109 *8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	4.0E-28	27	109	IPR009072	Histone-fold
Pfam	PF00808	2.2E-14	27	88	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
SuperFamily	SSF47113	5.1E-21	29	109	IPR009072	Histone-fold
PRINTS	PR00615	1.0E-7	52	70	No hit	No description
PRINTS	PR00615	1.0E-7	71	89	No hit	No description
PRINTS	PR00615	1.0E-7	90	108	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 219 aa Download sequence Send to blast
APAPQINPNN NVSVPQLVEQ DKNAAAIKKV TKIMRQLLPQ KAKISTNSKE MIQKCISKFK 60 DIITSKANER CLREYRKILK AEDILWAMKS LGFDNYETAF THYLKNYRDS GLGLGPRPME 120 PPVEIPKPIL PSQHVEAHVG LNTPINPSPI VEISDAVEMD EVWANLGDLD VGSLDNVALT 180 SFDDSTFFNF DEFDNADSTS FDVSTFFNFD GFDERFDN*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5g49_A	2e-26	19	109	8	97	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp57577_TGAC_v2_mRNA42188

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004516113.2	5e-47	nuclear transcription factor Y subunit B-5-like
TrEMBL	A0A2K3LZF0	5e-89	A0A2K3LZF0_TRIPR; Uncharacterized protein
STRING	XP_004516113.1	2e-46	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2728	32	79

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G47670.2	3e-28	nuclear factor Y, subunit B6

Link Out ? help Back to Top
Phytozome	Tp57577_TGAC_v2_mRNA42188