PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA4233
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family WRKY
Protein Properties Length: 280aa    MW: 31685.1 Da    PI: 4.5868
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA4233genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY98.15.6e-3154112259
                               --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                      WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                               +D ++WrKYGqK++kgs++pr+YYrC+++ gC++kk+vers++d ++++itY+++Hnh+
  Tp57577_TGAC_v2_mRNA4233  54 SDFWSWRKYGQKPIKGSPYPRGYYRCSTSkGCSAKKQVERSSTDASMLIITYTSKHNHP 112
                               699***********************9988****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.807.4E-3244114IPR003657WRKY domain
PROSITE profilePS5081132.59248114IPR003657WRKY domain
SuperFamilySSF1182904.32E-2650114IPR003657WRKY domain
SMARTSM007741.0E-3653113IPR003657WRKY domain
PfamPF031069.3E-2655112IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
MDNNASPQLE SEASNSELKQ ESQPFKKRKM VEKTVVTVKI GENVSKLKNE GLPSDFWSWR  60
KYGQKPIKGS PYPRGYYRCS TSKGCSAKKQ VERSSTDASM LIITYTSKHN HPDPTVDSTT  120
NSAQQLKESE TEVSATNSAQ QPKESETETI KDIPVTSNEE DQEHIVEEMI NNKSIVTSTD  180
QVTNEENFHY LQSPIHCSEE IIVDQEDPFK SNIEKSHIDK IDILLEEEPL CYAQLKNLTE  240
SKSEELDFFD ELEELPMSSS ILHFTRSIFS NERIPVAPS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B5e-24541151780Disease resistance protein RRS1
5w3x_D5e-24541151780Disease resistance protein RRS1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA4233
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1715331e-134AC171533.3 Medicago truncatula chromosome 7 BAC clone mth2-82b20, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003625977.11e-156probable WRKY transcription factor 35
TrEMBLG7KSU41e-155G7KSU4_MEDTR; Putative transcription factor WRKY family
STRINGAES821951e-156(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF97083241
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34830.14e-38WRKY DNA-binding protein 35