PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA4322
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family HD-ZIP
Protein Properties Length: 737aa    MW: 80469.9 Da    PI: 5.6408
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA4322genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox64.41.6e-2072127156
                               TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                  Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                               +++ +++t++q++e+e++F+++++p+ ++r+eL+++lgL+  qVk+WFqN+R+++k
  Tp57577_TGAC_v2_mRNA4322  72 KKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMK 127
                               688999***********************************************999 PP
2START223.47.1e-702634821206
                               HHHHHHHHHHHHHHHHC-TT-EEEE...EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S CS
                     START   1 elaeeaaqelvkkalaeepgWvkss...esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla 77 
                               ela +a++el+ +a+ ++p+W +     +++n++e++++f+++ +     ++ ea+r++ vv+m++++lve+l+d++ qW++ + 
  Tp57577_TGAC_v2_mRNA4322 263 ELAVAAMEELIGMAQMGDPLWLTTLeggSILNEEEYVRSFPRGIGpkpagFKCEASRETSVVIMNHVNLVEILMDVN-QWSTVFS 346
                               57899*************************************999********************************.******* PP

                               ....EEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEE CS
                     START  78 ....kaetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSg 151
                                   +a+tlev+s+g      galq+m+aelq++splvp R+++fvRy++q+++g+w++vdvS+d+ ++ p    ++R++++pSg
  Tp57577_TGAC_v2_mRNA4322 347 givsRAMTLEVLSTGvagnynGALQVMTAELQVPSPLVPtRESYFVRYCKQHSDGTWAVVDVSLDNLRPSP----SARCRRRPSG 427
                               *********************************************************************99....5********* PP

                               EEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
                     START 152 iliepksnghskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                               +li++++ng+skv+wvehv++++r +h+l+++lv+sg+a+gak+w atl+rqce+
  Tp57577_TGAC_v2_mRNA4322 428 CLIQEMPNGYSKVIWVEHVEVDDRGVHNLYKQLVSSGHAFGAKRWIATLDRQCER 482
                               *****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.5E-2250127IPR009057Homeodomain-like
SuperFamilySSF466897.94E-2058130IPR009057Homeodomain-like
PROSITE profilePS5007116.98969129IPR001356Homeobox domain
SMARTSM003891.3E-1970133IPR001356Homeobox domain
PfamPF000464.1E-1872127IPR001356Homeobox domain
CDDcd000862.23E-1972130No hitNo description
PROSITE patternPS000270104127IPR017970Homeobox, conserved site
PROSITE profilePS5084843.985254485IPR002913START domain
SuperFamilySSF559618.57E-36254484No hitNo description
CDDcd088752.57E-129258481No hitNo description
SMARTSM002344.1E-65263482IPR002913START domain
PfamPF018521.9E-58264482IPR002913START domain
Gene3DG3DSA:3.30.530.202.3E-5362477IPR023393START-like domain
SuperFamilySSF559611.65E-25502728No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 737 aa     Download sequence    Send to blast
MFQPNLMEAG QQQHHHQLLP FDMTTNNNNT SESDVPRIRE DELFDSATKS GNSENQEAAN  60
SGDDQDQPRA KKKRYHRHTQ HQIQEMEAFF KECPHPDDKQ RKELSRELGL EPLQVKFWFQ  120
NKRTQMKTQQ ERHENTQLRT ENEKLRADNM RFREALSNAS CPNCGGPTAI GEMSFDEHHL  180
RLENARLREE IDRISGIAAK YVGKPVVSYP LLSPSSVPPR PLELGIGGFG GQPGIGGGDM  240
YGAGDLLRSI SGPTEADKPM IIELAVAAME ELIGMAQMGD PLWLTTLEGG SILNEEEYVR  300
SFPRGIGPKP AGFKCEASRE TSVVIMNHVN LVEILMDVNQ WSTVFSGIVS RAMTLEVLST  360
GVAGNYNGAL QVMTAELQVP SPLVPTRESY FVRYCKQHSD GTWAVVDVSL DNLRPSPSAR  420
CRRRPSGCLI QEMPNGYSKV IWVEHVEVDD RGVHNLYKQL VSSGHAFGAK RWIATLDRQC  480
ERLASAMATN IPTVDVGVIT NQDGRKSMLK LAERMCISFC AGVSASTAHT WTTLSGTGAD  540
DVRVMTRKSV DDPGRPAGIV LSAATSFWLP VTPKRVFEFL RDENSRSEWD ILSNGGVVQE  600
MAHIANGRDT GNCVSLLRVN SANSSQSNML ILQESCTDTT GSFVIYAPVD IVAMNVVLNG  660
GDPDYVALLP SGFAILPDGG VGGENGNGGS LLTVAFQILV DSVPTAKLSL GSVATVNNLI  720
ACTVERIKAS LSGEVA*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA4322
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024631890.10.0homeobox-leucine zipper protein HDG2 isoform X1
SwissprotQ94C370.0HDG2_ARATH; Homeobox-leucine zipper protein HDG2
TrEMBLG7IKH90.0G7IKH9_MEDTR; Homeobox leucine zipper protein
STRINGAES672500.0(Medicago truncatula)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05230.40.0homeodomain GLABROUS 2