PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp57577_TGAC_v2_mRNA4343

Organism

Trifolium pratense

Taxonomic ID

57577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium

Family

YABBY

Protein Properties

Length: 196aa MW: 21767.7 Da PI: 9.3918

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp57577_TGAC_v2_mRNA4343	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	233.6	4.7e-72	9	170	6	170
YABBY 6 sseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekee 90 e+vCyv+CnfCnt lavsvP +sl+++vtvrCGhC++llsvn+ as l++ + d++ + + ++ + ++e+ ++ v+ ++ Tp57577_TGAC_v2_mRNA4343 9 GNERVCYVHCNFCNTTLAVSVPCSSLLTIVTVRCGHCANLLSVNMGAASSLQSFPPQQDHHPQFQKQQLVNCHQEASRKEVVGSS 93 579*******************************************9998888876666665566666666666666666666 PP YABBY 91 sastsvsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 s+s+s+s+ ++ +e pr+pp irPPekrqrvPsaynrfikeeiqrika+nPdishreafs+aaknWahfP+ihfgl Tp57577_TGAC_v2_mRNA4343 94 SSSSSKSKA--FQHLIHEQPRTPP-IRPPEKRQRVPSAYNRFIKEEIQRIKAGNPDISHREAFSTAAKNWAHFPHIHFGL 170 555555553..4778899999999.9**************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	1.1E-72	10	170	IPR006780	YABBY protein
SuperFamily	SSF47095	2.62E-8	110	163	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	9.3E-5	118	164	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development
GO:0010158	Biological Process	abaxial cell fate specification

Sequence ? help Back to Top
Protein Sequence Length: 196 aa Download sequence Send to blast
MSMDMNMMGN ERVCYVHCNF CNTTLAVSVP CSSLLTIVTV RCGHCANLLS VNMGAASSLQ 60 SFPPQQDHHP QFQKQQLVNC HQEASRKEVV GSSSSSSSKS KAFQHLIHEQ PRTPPIRPPE 120 KRQRVPSAYN RFIKEEIQRI KAGNPDISHR EAFSTAAKNW AHFPHIHFGL KLDASKQAKL 180 DHGVGEATQK SNGFY*

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in the abaxial cell fate determination during embryogenesis and organogenesis. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp57577_TGAC_v2_mRNA4343

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT136096	0.0	BT136096.1 Medicago truncatula clone JCVI-FLMt-10K9 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003596925.1	1e-122	putative axial regulator YABBY 2 isoform X1
Refseq	XP_024632027.1	1e-122	putative axial regulator YABBY 2 isoform X1
Swissprot	Q9XFB0	2e-76	YAB2_ARATH; Putative axial regulator YABBY 2
TrEMBL	G7IRH4	1e-121	G7IRH4_MEDTR; Plant-specific transcription factor YABBY family protein
STRING	AES67176	1e-121	(Medicago truncatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1124	34	112

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08465.1	2e-70	YABBY family protein

Link Out ? help Back to Top
Phytozome	Tp57577_TGAC_v2_mRNA4343

Publications ? help Back to Top
Sacharowski SP, et al. SWP73 Subunits of Arabidopsis SWI/SNF Chromatin Remodeling Complexes Play Distinct Roles in Leaf and Flower Development. Plant Cell, 2015. 27(7): p. 1889-906 [PMID:26106148]