PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA4394
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family bHLH
Protein Properties Length: 183aa    MW: 20613 Da    PI: 5.4614
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA4394genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH22.52.1e-07138160729
                               HHHHHHHHHHHHHHHHHHCTSCC CS
                       HLH   7 erErrRRdriNsafeeLrellPk 29 
                               + E+rRRdr+++++ eLr+l+P+
  Tp57577_TGAC_v2_mRNA4394 138 ICEKRRRDRMKDKLYELRSLVPN 160
                               57********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.69E-7128164IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS508889.286131181IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.3E-7133161IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.0E-4138160IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.76E-6140166No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 183 aa     Download sequence    Send to blast
MDDHQNSLVY TNNFELHDFI HDPNFDQSID LIHGENEDAI CNFGSNLIND CFVDNNHHEL  60
LSIPPNPLIF DHNINNYGNI VNVHDPSSST IGSFSCYDRE VKGEGVNDGG PSSATTITTT  120
AIDGAKHRAK TDKSNILICE KRRRDRMKDK LYELRSLVPN ITKVSIFISI EFQTLKFIHI  180
LI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA4394
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013464840.16e-62transcription factor FER-LIKE IRON DEFICIENCY-INDUCED TRANSCRIPTION FACTOR
TrEMBLA0A2K3LSM91e-115A0A2K3LSM9_TRIPR; FER-LIKE IRON DEFICIENCY-INDUCED transcription factor-like protein (Fragment)
STRINGXP_004487563.12e-57(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF36793358
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28160.13e-23FER-like regulator of iron uptake