PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA4562
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family MYB
Protein Properties Length: 308aa    MW: 34434.3 Da    PI: 6.6172
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA4562genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.13.6e-171462148
                              TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
           Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                              +g+WTteEde+lv+ +k+ Gg+ +W++ ++  g++R++k+c++rw +yl
  Tp57577_TGAC_v2_mRNA4562 14 KGPWTTEEDEILVNFIKKNGGHgSWRSLPKLAGLRRCGKSCRLRWTNYL 62
                              79*******************9*************************97 PP
2Myb_DNA-binding47.15.6e-1568113148
                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
           Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                               rg++T++E++l +++++ lG++ W++Ia+ +  gRt++++k+ w+++l
  Tp57577_TGAC_v2_mRNA4562  68 RGPFTPQEEKLVIQLHAILGNR-WAAIASQLA-GRTDNEIKNLWNTHL 113
                               89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.0E-22564IPR009057Homeodomain-like
PROSITE profilePS5129417.336962IPR017930Myb domain
SuperFamilySSF466893.74E-2810109IPR009057Homeodomain-like
SMARTSM007172.7E-121364IPR001005SANT/Myb domain
PfamPF002491.1E-141462IPR001005SANT/Myb domain
CDDcd001679.59E-91662No hitNo description
PROSITE profilePS5129424.45463117IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.3E-2565118IPR009057Homeodomain-like
SMARTSM007172.0E-1467115IPR001005SANT/Myb domain
PfamPF002494.3E-1468113IPR001005SANT/Myb domain
CDDcd001672.88E-1070113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0009909Biological Processregulation of flower development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MGRTPCCDKM GLKKGPWTTE EDEILVNFIK KNGGHGSWRS LPKLAGLRRC GKSCRLRWTN  60
YLRPDIKRGP FTPQEEKLVI QLHAILGNRW AAIASQLAGR TDNEIKNLWN THLKKRLVCM  120
GIDPQTHEPI ASSHYYPLSK SHSSIATRHM AQWESARLEA EARLSKDSSL FNNNNIPSFA  180
SNKTDSDSDY FLKIWNSEVG QSFRSVRKSD DGDDDDDKTR CISSMSQEGS SCNNTKCGSV  240
SAITTITDLA SSTLASNVKE DFEWRNYKSF DIGCDDSSSS NDLEDSSDTA LQLLLDFPSN  300
NDMSFLE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-26121175108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that may play a role in flower development by repressing ANT (PubMed:19232308). Regulates the transition of meristem identity from vegetative growth to flowering. Acts downstream of LFY and upstream of AP1. Directly activates AP1 to promote floral fate. Together with LFY and AP1 may constitute a regulatory network that contributes to an abrupt and robust meristem identity transition (PubMed:21750030). {ECO:0000269|PubMed:19232308, ECO:0000269|PubMed:21750030}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00114ampDAPTransfer from AT3G61250Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA4562
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013444869.10.0transcription factor MYB41
SwissprotQ9M2D91e-120MYB17_ARATH; Transcription factor MYB17
TrEMBLA0A2K3NBN90.0A0A2K3NBN9_TRIPR; Protein ODORANT1-like
STRINGAES752060.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23313280
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61250.11e-114myb domain protein 17