PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp57577_TGAC_v2_mRNA4707

Organism

Trifolium pratense

Taxonomic ID

57577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium

Family

NAC

Protein Properties

Length: 315aa MW: 35669 Da PI: 7.9013

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp57577_TGAC_v2_mRNA4707	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	143.7	1e-44	67	197	2	127
NAM 2 ppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksg 81 p GfrF Pt+eelv +yL++++eg+ +++++vi+ +di+ ePwdLp+ k+++e+++w+fFs+r++++ +g r+nr+t+ g Tp57577_TGAC_v2_mRNA4707 67 PTGFRFYPTEEELVGFYLHNQLEGQMhHHINRVIPVIDINAKEPWDLPTfageKCRGETEQWFFFSPRQERELRGGRPNRTTSCG 151 78********************995666778***********546766677888********************* PP NAM 82 yWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyr 127 yWkatg+ v+s+k++++g+kkt+vfykg+ap+g+kt+W mhey+ Tp57577_TGAC_v2_mRNA4707 152 YWKATGSPGYVYSSKNKVIGIKKTMVFYKGKAPSGRKTKWKMHEYK 197 *******************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.57E-47	61	222	IPR003441	NAC domain
PROSITE profile	PS51005	47.36	66	224	IPR003441	NAC domain
Pfam	PF02365	3.0E-24	67	197	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010200	Biological Process	response to chitin
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 315 aa Download sequence Send to blast
LSEHRTSPSP SPSPSPSPKP KSIALPKTTG VTPYQEENVL YWSGCIFSFW VTTKLNQQQK 60 INMEDPPTGF RFYPTEEELV GFYLHNQLEG QMHHHINRVI PVIDINAKEP WDLPTFAGEK 120 CRGETEQWFF FSPRQERELR GGRPNRTTSC GYWKATGSPG YVYSSKNKVI GIKKTMVFYK 180 GKAPSGRKTK WKMHEYKAIE QHSPSNTNPP KLRHEFSLCR IYVISGSFCS FDRRPLEMPK 240 VELQLDHNAS TSQQVVAELD ESSLCATTHS GGAGRNHDDA LIGGSSGTNW NNVANNGVDE 300 PEVPLWEWDH LNWM*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-34	67	222	18	163	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-34	67	222	18	163	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-34	67	222	18	163	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-34	67	222	18	163	NO APICAL MERISTEM PROTEIN
3swm_A	1e-34	67	222	21	166	NAC domain-containing protein 19
3swm_B	1e-34	67	222	21	166	NAC domain-containing protein 19
3swm_C	1e-34	67	222	21	166	NAC domain-containing protein 19
3swm_D	1e-34	67	222	21	166	NAC domain-containing protein 19
3swp_A	1e-34	67	222	21	166	NAC domain-containing protein 19
3swp_B	1e-34	67	222	21	166	NAC domain-containing protein 19
3swp_C	1e-34	67	222	21	166	NAC domain-containing protein 19
3swp_D	1e-34	67	222	21	166	NAC domain-containing protein 19
4dul_A	1e-34	67	222	18	163	NAC domain-containing protein 19
4dul_B	1e-34	67	222	18	163	NAC domain-containing protein 19
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp57577_TGAC_v2_mRNA4707

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003596841.1	1e-142	NAC domain-containing protein 90
Swissprot	Q9FMR3	3e-83	NAC90_ARATH; NAC domain-containing protein 90
TrEMBL	A0A2Z6MGF0	1e-170	A0A2Z6MGF0_TRISU; Uncharacterized protein
STRING	AES67092	1e-142	(Medicago truncatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF871	34	123

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G44350.2	9e-86	NAC domain containing protein 61

Link Out ? help Back to Top
Phytozome	Tp57577_TGAC_v2_mRNA4707

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]