PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp57577_TGAC_v2_mRNA4711

Organism

Trifolium pratense

Taxonomic ID

57577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium

Family

LBD

Protein Properties

Length: 169aa MW: 18182.1 Da PI: 8.6604

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp57577_TGAC_v2_mRNA4711	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	79	8e-25	4	107	1	99
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvi 80 +C++C+ lrr+C+++C++ p++ p++q + + +++k++G++ +l+ll+++ +++ ++++sl+yeA r+ +P +Ga+g++ Tp57577_TGAC_v2_mRNA4711 4 SCNGCRALRRGCSENCIIKPCLewircPETQGRVTLFLAKFYGRTGLLNLLANATNKNSIAVFKSLLYEASGRLANPTHGALGLL 88 6***********************9****************************************************** PP DUF260 81 lklqqqleqlkaelallke 99 l++++ +++++e++l+++ Tp57577_TGAC_v2_mRNA4711 89 LTGEWSRCEAAVEAVLTGS 107 ***********998876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	15.302	3	109	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.0E-20	4	104	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 169 aa Download sequence Send to blast
MRSSCNGCRA LRRGCSENCI IKPCLEWIRC PETQGRVTLF LAKFYGRTGL LNLLANATNK 60 NSIAVFKSLL YEASGRLANP THGALGLLLT GEWSRCEAAV EAVLTGSNIN VVTVVDGQTS 120 PCTRIVLKSD LENGNMKTAE ASSVPLILKT IYSHARASLF FLLDLVCS*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp57577_TGAC_v2_mRNA4711

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013470179.1	5e-63	LOB domain-containing protein 42
Swissprot	Q9ZW96	3e-44	LBD40_ARATH; LOB domain-containing protein 40
TrEMBL	A0A2K3MLT6	1e-98	A0A2K3MLT6_TRIPR; LOB domain-containing protein
STRING	AES84556	2e-62	(Medicago truncatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF14785	6	14

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G67100.1	4e-42	LOB domain-containing protein 40

Link Out ? help Back to Top
Phytozome	Tp57577_TGAC_v2_mRNA4711