PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA4725
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family C2H2
Protein Properties Length: 210aa    MW: 23332.1 Da    PI: 4.9127
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA4725genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.50.000445981123
                              EEETTTTEEESSHHHHHHHHHHT CS
                   zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                              y+C+ C++ F ++  L  H+++H
  Tp57577_TGAC_v2_mRNA4725 59 YSCNFCSRKFLTPQALGGHQNSH 81
                              99*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576679.36E-65787No hitNo description
PROSITE profilePS5015710.8245986IPR007087Zinc finger, C2H2
PROSITE patternPS0002806181IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    Send to blast
MCKRKAIVLV ESDIEINDSM SPNIGDAGED ESTNSSKKNS PFLLFGFIID PHKGIQHAYS  60
CNFCSRKFLT PQALGGHQNS HKLERRLKKR TGAMNTDSIN HANSNQGVVS LNTVTPYHGA  120
YGYQYNEFNN MIQLPVSLNF DARNFLVPLQ DIPKTDEVIN DADQSIVRQQ ATMTEVDYGS  180
ISNGCAAVED EVKETQEEEA IQDYLILKL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18490RRLKKRT
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA4725
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013447966.13e-60zinc finger protein 1
TrEMBLA0A2K3L7J11e-154A0A2K3L7J1_TRIPR; Zinc finger protein
STRINGAES779543e-62(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1627936
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57520.11e-11zinc finger protein 2