PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA4734
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family M-type_MADS
Protein Properties Length: 82aa    MW: 9443.98 Da    PI: 10.6286
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA4734genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF102.61.4e-322474151
                              S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                    SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                              krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fss+g+lyey++
  Tp57577_TGAC_v2_mRNA4734 24 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYAN 74
                              79***********************************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.4E-411675IPR002100Transcription factor, MADS-box
PROSITE profilePS5006633.5431676IPR002100Transcription factor, MADS-box
CDDcd002659.10E-401779No hitNo description
SuperFamilySSF554558.76E-311778IPR002100Transcription factor, MADS-box
PRINTSPR004044.9E-341838IPR002100Transcription factor, MADS-box
PROSITE patternPS0035001872IPR002100Transcription factor, MADS-box
PfamPF003198.7E-282572IPR002100Transcription factor, MADS-box
PRINTSPR004044.9E-343853IPR002100Transcription factor, MADS-box
PRINTSPR004044.9E-345374IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 82 aa     Download sequence    Send to blast
MAFQNQSMSD SPQRKIGRGK IEIKRIENTT NRQVTFCKRR NGLLKKAYEL SVLCDAEVAL  60
IVFSSRGRLY EYANNRYLKL L*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1egw_A2e-211781165MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A
1egw_B2e-211781165MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A
1egw_C2e-211781165MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A
1egw_D2e-211781165MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A
3mu6_A2e-211781165Myocyte-specific enhancer factor 2A
3mu6_B2e-211781165Myocyte-specific enhancer factor 2A
3mu6_C2e-211781165Myocyte-specific enhancer factor 2A
3mu6_D2e-211781165Myocyte-specific enhancer factor 2A
5f28_A2e-211681166MEF2C
5f28_B2e-211681166MEF2C
5f28_C2e-211681166MEF2C
5f28_D2e-211681166MEF2C
6byy_A2e-211681166MEF2 CHIMERA
6byy_B2e-211681166MEF2 CHIMERA
6byy_C2e-211681166MEF2 CHIMERA
6byy_D2e-211681166MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in regulating genes that determines stamen and carpel development in wild-type flowers. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA4734
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF1598041e-85KF159804.1 Medicago truncatula cultivar Jemalong A17 MADS-box transcription factor AGAMOUSa (AGa) mRNA, complete cds.
GenBankKJ4706331e-85KJ470633.1 Medicago truncatula AGAMOUSa (AGa) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012572611.19e-48floral homeotic protein AGAMOUS isoform X8
SwissprotQ408724e-41AG_PANGI; Floral homeotic protein AGAMOUS
TrEMBLA0A1S3ECE02e-46A0A1S3ECE0_CICAR; floral homeotic protein AGAMOUS isoform X8
STRINGXP_004485952.19e-47(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF11933360
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58780.22e-31MIKC_MADS family protein